b0fa397cc96b7cb098c1c8fb03456216053d5045 markd Sun May 14 15:32:14 2023 -0700 re-enable test that were disabled furing CVS to git conversion diff --git src/utils/pslMap/tests/makefile src/utils/pslMap/tests/makefile index 178d409..fdf3dcf 100644 --- src/utils/pslMap/tests/makefile +++ src/utils/pslMap/tests/makefile @@ -1,36 +1,30 @@ kentSrc = ../../.. include ${kentSrc}/inc/common.mk #pslMap = valgrind --tool=memcheck --num-callers=25 pslMap pslMap = ${DESTBINDIR}/pslMap pslSwap = ${DESTBINDIR}/pslSwap blastToPsl = ${DESTBINDIR}/blastToPsl pslCheck = ${DESTBINDIR}/pslCheck chainSwap = ${DESTBINDIR}/chainSwap all: test: gapBoth mrnaMrnaMap mrnaMrnaXMap mrnaMapOver mrnaMapOverSwap \ - mrnaMapOverChain mrnaMapOverChainSwap testMapFileWithInQName - -# things with large files that we want to remove their big history from cvs -# but soon will replace with short versions and no big history. -# temporarily moved to /hive/users/galt/largeCvsFiles/kent/... -# input/kgMRna.psl -# input/negQ.chain -testnot: kgProt negQChain + mrnaMapOverChain mrnaMapOverChainSwap testMapFileWithInQName \ + kgProt negQChain # basic tests of protein -> mrna -> genome mapping kgProt: mkdirs ${blastToPsl} input/kgProtMRna.blast output/kgProtMRna.psl ${pslMap} output/kgProtMRna.psl input/kgMRna.psl output/$@.psl ${pslCheck} -verbose=0 output/$@.psl diff -u expected/$@.psl output/$@.psl # this generated a gap in both query and target gapBoth: mkdirs ${blastToPsl} input/gapBothProtMRna.blast output/gapBothProtMRna.psl ${pslMap} output/gapBothProtMRna.psl input/gapBothMRna.psl output/$@.psl ${pslCheck} -verbose=0 output/$@.psl diff -u expected/$@.psl output/$@.psl