4ca55974c606b06a6126be29700027715435ae8d hiram Wed May 3 23:07:36 2023 -0700 update RefSeq assemblies moved some to legacy refs #29545 diff --git src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt index 1104e1c..ff5d7a7 100644 --- src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt +++ src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt @@ -102,49 +102,53 @@ GCA_004115265.2_mRhiFer1_v1.p mammals GCA_004365145.1_OryAfe_v1_BIUU mammals GCA_006229205.1_meerkat_22Aug2017_6uvM2_HiC mammals GCA_007364275.2_fArcCen1 fish GCA_009663435.1_Callithrix_jacchus_cj1700_1.0 primates GCA_009762305.1_mZalCal1.pri mammals GCA_009764475.1_sPriPec2.pri vertebrate GCA_009764565.1_rDerCor1.pri vertebrate GCA_009769545.1_fCycLum1.pri fish GCA_009769625.1_bCygOlo1.pri birds GCA_009769485.1_bCygOlo1.alt birds GCA_009806435.2_UM_NZW_1.0 mammals GCA_009819505.1_bCatUst1.alt birds GCA_009819705.1_fHipHip1.pri fish GCA_009873245.2_mBalMus1.v2 mammals +GCA_009829125.1_fPerMag1.pri fish GCA_009914755.4_T2T-CHM13v2.0 primates GCA_010909765.1_sAmbRad1.pri vertebrate GCA_011004845.1_fEsoLuc1.pri fish GCA_011064685.1_ZJU_Sfru_1.0 invertebrate GCA_011100635.1_mTriVul1.pri mammals GCA_011762505.1_mArvNil1.pat.X mammals GCA_011762595.1_mTurTru1.mat.Y mammals GCA_012275295.1_bMelUnd1.mat.Z birds GCA_014108255.1_mRhiFer1.p mammals GCA_014356525.1_ASM1435652v1 invertebrate +GCA_014839835.1_bDryPub1.pri birds GCA_014905235.2_Bmori_2016v1.0 invertebrate GCA_015227675.2_mRatBN7.2 mammals GCA_015227805.2_bHirRus1.pri.v2 birds GCA_016128335.1_ZJU1.0 birds GCA_016432865.1_AdamAnt mammals +GCA_017976375.1_bCucCan1.pri birds GCA_018139145.1_ASM1813914v1 birds GCA_018296145.1_Otsh_v2.0 fish GCA_020740725.1_bCorHaw1.pri.cur birds GCA_020740795.1_bApuApu2.pri.cur birds +GCA_028500815.1_bRisTri1.patW.cur.20221130 birds GCA_900006655.3_Susie3 primates GCA_900094665.2_CAROLI_EIJ_v1.1 mammals GCA_900324465.2_fAnaTes1.2 fish GCA_900634415.1_fCotGob3.1 fish GCA_900634775.1_fGouWil2.1 fish GCA_901343595.1_MONAX5 mammals GCA_901699155.1_bStrTur1.1 birds GCA_901699165.1_bStrTur1.1_alternate_haplotype birds GCA_901709675.1_fSynAcu1.1 fish GCA_902153765.1_bAquChr1.2_alternate_haplotype birds GCA_902459505.1_aGeoSer1.1 vertebrate GCA_902500255.1_fThaAma1.1 fish GCA_904849725.1_MorexV3_pseudomolecules_assembly plants GCA_905147045.1_ilAglIoxx1.1 invertebrate GCA_905147105.1_ilPieBrab1.1 invertebrate @@ -167,136 +171,152 @@ GCF_000002595.1_v3.0 plants GCF_000002775.4_Pop_tri_v3 plants GCF_000002995.3_ASM299v2 invertebrate GCF_000004335.2_AilMel_1.0 mammals GCF_000004515.4_Glycine_max_v2.0 plants GCF_000004515.5_Glycine_max_v2.1 plants GCF_000004555.1_ASM455v1 invertebrate GCF_000004665.1_Callithrix_jacchus-3.2 primates GCF_000005975.2_dyak_caf1 invertebrate GCF_000006175.1_ASM617v2 archaea GCF_000090795.1_v1.0 invertebrate GCF_000143185.1_v1.0 fungi GCF_000149645.2_ASM14964v3 fungi GCF_000164845.3_VicPac3.1 mammals GCF_000165045.1_Callorhinchus_milii-6.1.3 vertebrate +GCF_000182805.2_ASM18280v2 fungi GCF_000188115.4_SL3.0 plants GCF_000189315.1_Devil_ref_v7.0 mammals GCF_000208655.1_Dasnov3.0 mammals GCF_000215625.1_MusPutFur1.0 mammals GCF_000231095.1_Oryza_brachyantha.v1.4b plants GCF_000235385.1_SaiBol1.0 primates GCF_000236235.1_SpeTri2.0 mammals GCF_000241765.3_Chrysemys_picta_bellii-3.0.3 vertebrate +GCF_000241765.4_Chrysemys_picta_BioNano-3.0.4 vertebrate GCF_000255335.1_Mocc_1.0 invertebrate GCF_000264685.3_Panu_3.0 primates GCF_000300575.1_Agabi_varbisH97_2 fungi GCF_000340665.1_C.cajan_V1.0 plants GCF_000341935.1_Ccin1 invertebrate GCF_000344595.1_CheMyd_1.0 vertebrate GCF_000364345.1_Macaca_fascicularis_5.0 primates GCF_000365465.2_Ptep_2.0 invertebrate GCF_000442215.1_Lipotes_vexillifer_v1 mammals GCF_000471905.2_AMTR1.0 plants +GCF_000495115.1_PopEup_1.0 plants GCF_000511025.2_RefBeet-1.2.2 plants GCF_000687205.1_ASM68720v1 birds GCF_000690535.1_ASM69053v1 birds 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mammals GCF_001891065.1_H_comes_QL1_v1 fish GCF_002007445.1_ASM200744v2 mammals GCF_002021735.1_Okis_V1 fish GCF_002162155.1_WEW_v2.0 plants GCF_002201575.1_ASM220157v1 mammals GCF_002263795.1_ARS-UCD1.2 mammals GCF_002706865.1_ASM270686v1 invertebrate GCF_002776525.2_ASM277652v2 primates GCF_002776525.4_ASM277652v4 primates GCF_002776525.3_ASM277652v3 primates +GCF_002806865.1_ASM280686v2 plants +GCF_002814215.1_Sedor1 fish +GCF_002837175.2_ASM283717v2 mammals GCF_002870075.1_Lsat_Salinas_v7 plants GCF_002870075.2_Lsat_Salinas_v7 plants +GCF_002870075.3_Lsat_Salinas_v8 plants +GCF_002906115.1_CorkOak1.0 plants GCF_002922805.1_Om_v0.7.RACA fish GCF_002940915.1_ASM294091v2 mammals GCF_002994745.1_RchiOBHm-V2 plants GCF_003031525.1_Neophocaena_asiaeorientalis_V1 mammals GCF_003227715.1_Hsal_v8.5 invertebrate GCF_003584765.1_ASM358476v1 mammals GCF_003668045.1_CriGri-PICR mammals GCF_003676075.1_ASM367607v1 mammals GCF_003676075.2_GSC_YBM_2.0 mammals GCF_003710045.1_USU_Nmel_1.2 invertebrate GCF_003945595.1_ASM394559v1 birds GCF_003957565.1_bTaeGut1_v1.p birds GCF_004027225.1_bStrHab1_v1.p birds GCF_004115215.1_mOrnAna1.p.v1 mammals GCF_004115265.1_mRhiFer1_v1.p mammals GCF_004118075.1_ASM411807v1 plants GCF_004126475.1_mPhyDis1_v1.p mammals GCF_004153925.1_Obicornis_v3 invertebrate GCF_004382195.1_ASM438219v1 invertebrate GCF_004664715.1_Pero_0.1 mammals GCF_005281655.1_TAMU_Nfulva_1.0 invertebrate GCF_005508785.1_pea_aphid_22Mar2018_4r6ur invertebrate GCF_006149115.1_Oner_1.0 fish GCF_007474595.1_mLynCan4_v1.p mammals GCF_008315115.1_SLUC_FBN_1 fish GCF_008831285.1_ASM883128v1 plants GCF_009764565.2_rDerCor1.pri.v3 vertebrate GCF_009819885.1_bCatUst1.pri birds GCF_009828535.1_HMol primates +GCF_009829125.1_fPerMag1.pri fish GCF_009858895.2_ASM985889v3 viral +GCF_010645085.1_ASM1064508v1 vertebrate GCF_010909765.1_sAmbRad1.pri vertebrate GCF_011064685.1_ZJU_Sfru_1.0 invertebrate +GCF_012460135.1_BPBGC_Mater_1.0 birds GCF_013339695.1_ASM1333969v1 invertebrate GCF_013377495.1_Cygnus_atratus_primary_v1.0 birds +GCF_014824575.1_WHU_Shon_v2 mammals GCF_014898055.1_MPIMG_talOcc4 mammals +GCF_014898055.2_MPIMG_talOcc4v2 mammals GCF_014905685.1_NemWhi1 fish GCF_015227805.1_bHirRus1.pri.v2 birds GCF_015237465.1_rCheMyd1.pri vertebrate GCF_016086655.2_UVic_Lsal_1.1 invertebrate GCF_016699345.1_BCM_Sbol_2.0 primates GCF_016700215.1_bGalGal1.pat.whiteleghornlayer.GRCg7w birds GCF_016746245.1_Prin_Dsan_1.0 invertebrate GCF_016746365.1_Prin_Dyak_Tai18E2_2.0 invertebrate GCF_016746395.1_Prin_Dsim_3.0 invertebrate GCF_016920785.1_Ixodes_scapularus_ComboLowHiFi invertebrate GCF_017639655.1_bFalNau1.pat birds +GCF_021288785.1_ASM2128878v2 mammals +GCF_900094665.1_CAROLI_EIJ_v1.1 mammals GCF_900246225.1_fAstCal1.2 fish GCF_900324465.1_fAnaTes1.1 fish GCF_900324465.2_fAnaTes1.2 fish GCF_900324485.1_fMasArm1.1 fish GCF_900496995.1_bAquChr1.2 birds GCF_900634625.1_fParRan2.1 fish GCF_900634775.1_fGouWil2.1 fish GCF_900634795.2_fBetSpl5.2 fish GCF_900700375.1_fDenClu1.1 fish GCF_900700415.1_Ch_v2.0.2 fish GCF_900747795.1_fErpCal1.1 vertebrate GCF_900880675.1_fSpaAur1.1 fish GCF_900963305.1_fEcheNa1.1 fish GCF_901001165.1_fSalTru1.1 fish GCF_902150015.1_genome_assembly_l500 birds