All File Changes

v448_base to v449_preview (2023-05-15 to 2023-05-22) v449

• src/hg/js/hgGateway.js
  • lines changed 11, context: html, text, full: html, text
    60d9b1d7e95db856ac2a31eb65d5e08f4e732f4e Fri May 19 10:08:08 2023 -0700
    Add short DNA sequence recognition regex to hgSearch/hgGateway so users can paste short sequences into the search box and go right to hgBlat, same as on hgTracks, refs #31292
• src/hg/js/hgSearch.js
  • lines changed 10, context: html, text, full: html, text
    60d9b1d7e95db856ac2a31eb65d5e08f4e732f4e Fri May 19 10:08:08 2023 -0700
    Add short DNA sequence recognition regex to hgSearch/hgGateway so users can paste short sequences into the search box and go right to hgBlat, same as on hgTracks, refs #31292
• src/hg/js/hgTracks.js
  • lines changed 1, context: html, text, full: html, text
    704da00109657134150e13c3791548e747593cb3 Fri May 19 16:34:23 2023 -0700
    dump the cart to trash if the browser took too long to draw
• src/hg/js/utils.js
  • lines changed 9, context: html, text, full: html, text
    704da00109657134150e13c3791548e747593cb3 Fri May 19 16:34:23 2023 -0700
    dump the cart to trash if the browser took too long to draw
• src/hg/lib/cart.c
  • lines changed 33, context: html, text, full: html, text
    704da00109657134150e13c3791548e747593cb3 Fri May 19 16:34:23 2023 -0700
    dump the cart to trash if the browser took too long to draw
• src/hg/lib/hubConnect.c
  • lines changed 8, context: html, text, full: html, text
    d8400c6f01be26c33617129a96154b2e2186f023 Mon May 15 14:10:46 2023 -0700
    under protest revert ac57c34ad3a97779a948f4f716d704c22061c98 per code review refs #31274
• src/hg/lib/trackHub.c
  • lines changed 2, context: html, text, full: html, text
    8b6ad29403132f13b331261b582026b92aa3ed4c Tue May 16 16:14:25 2023 -0700
    errAbort early, which causes hubCheck to print a message, when a genome name has white space characters, refs #31108
• src/hg/makeDb/doc/asmHubs/master.run.list
  • lines changed 1, context: html, text, full: html, text
    85165cc45b92c802b3700cb6d13b879a353b27ca Tue May 16 11:42:54 2023 -0700
    adding one per user request refs #29545
  • lines changed 1, context: html, text, full: html, text
    b5161911afc87e6a6ef0e749a86e5d8ebbd442ba Tue May 16 12:58:35 2023 -0700
    finishing one that had a broken build refs #29545
  • lines changed 2, context: html, text, full: html, text
    34fb4278c6c2ee27d098bb753f3f7574fee543d1 Fri May 19 14:44:28 2023 -0700
    adding GCF_029281585.1_NHGRI_mGorGor1-v1 refs #29545
  • lines changed 2, context: html, text, full: html, text
    9568517984aa16531fa5e6f928bf9fb06ca7b227 Fri May 19 23:16:52 2023 -0700
    catching up already done GCF_000090795.2_v1.1 and GCF_000255335.2_Mocc_1.1 refs #29545
  • lines changed 10, context: html, text, full: html, text
    397d7f03bbbe2eb9cd0220577e9a9636066560a9 Sun May 21 20:20:23 2023 -0700
    adding 4 for a RefSeq update refs #29545
• src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv
  • lines changed 1, context: html, text, full: html, text
    85165cc45b92c802b3700cb6d13b879a353b27ca Tue May 16 11:42:54 2023 -0700
    adding one per user request refs #29545
  • lines changed 1, context: html, text, full: html, text
    b5161911afc87e6a6ef0e749a86e5d8ebbd442ba Tue May 16 12:58:35 2023 -0700
    finishing one that had a broken build refs #29545
• src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv
  • lines changed 6, context: html, text, full: html, text
    397d7f03bbbe2eb9cd0220577e9a9636066560a9 Sun May 21 20:20:23 2023 -0700
    adding 4 for a RefSeq update refs #29545
• src/hg/makeDb/trackDb/cow/bosTau4/multiz5way.html
  • lines changed 1, context: html, text, full: html, text
    839b01e044a9a432355073358e79fbd44def0a65 Mon May 15 10:34:45 2023 -0700
    Removing text that is out of date in the Multiz Alignment & Conservation track methods section, refs #30073
• src/hg/makeDb/trackDb/horse/equCab2/multiz6way.html
  • lines changed 1, context: html, text, full: html, text
    839b01e044a9a432355073358e79fbd44def0a65 Mon May 15 10:34:45 2023 -0700
    Removing text that is out of date in the Multiz Alignment & Conservation track methods section, refs #30073
• src/hg/makeDb/trackDb/human/hg18/cons44way.html
  • lines changed 1, context: html, text, full: html, text
    839b01e044a9a432355073358e79fbd44def0a65 Mon May 15 10:34:45 2023 -0700
    Removing text that is out of date in the Multiz Alignment & Conservation track methods section, refs #30073
• src/hg/makeDb/trackDb/human/hg18/multiz28way.html
  • lines changed 1, context: html, text, full: html, text
    839b01e044a9a432355073358e79fbd44def0a65 Mon May 15 10:34:45 2023 -0700
    Removing text that is out of date in the Multiz Alignment & Conservation track methods section, refs #30073
• src/hg/makeDb/trackDb/human/hg19/cons100way.html
  • lines changed 1, context: html, text, full: html, text
    839b01e044a9a432355073358e79fbd44def0a65 Mon May 15 10:34:45 2023 -0700
    Removing text that is out of date in the Multiz Alignment & Conservation track methods section, refs #30073
• src/hg/makeDb/trackDb/human/hg19/cons46way.html
  • lines changed 1, context: html, text, full: html, text
    839b01e044a9a432355073358e79fbd44def0a65 Mon May 15 10:34:45 2023 -0700
    Removing text that is out of date in the Multiz Alignment & Conservation track methods section, refs #30073
• src/hg/makeDb/trackDb/human/hg38/cons100way.html
  • lines changed 1, context: html, text, full: html, text
    839b01e044a9a432355073358e79fbd44def0a65 Mon May 15 10:34:45 2023 -0700
    Removing text that is out of date in the Multiz Alignment & Conservation track methods section, refs #30073
• src/hg/makeDb/trackDb/lamprey/petMar1/multiz6way.html
  • lines changed 1, context: html, text, full: html, text
    839b01e044a9a432355073358e79fbd44def0a65 Mon May 15 10:34:45 2023 -0700
    Removing text that is out of date in the Multiz Alignment & Conservation track methods section, refs #30073
• src/hg/makeDb/trackDb/lancelet/braFlo1/multiz5way.html
  • lines changed 1, context: html, text, full: html, text
    839b01e044a9a432355073358e79fbd44def0a65 Mon May 15 10:34:45 2023 -0700
    Removing text that is out of date in the Multiz Alignment & Conservation track methods section, refs #30073
• src/hg/makeDb/trackDb/mouse/mm10/cons60way.html
  • lines changed 1, context: html, text, full: html, text
    839b01e044a9a432355073358e79fbd44def0a65 Mon May 15 10:34:45 2023 -0700
    Removing text that is out of date in the Multiz Alignment & Conservation track methods section, refs #30073
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.placentalsChainNet.ra
  • lines changed 2, context: html, text, full: html, text
    af684480c4c6289683b34bde7fe32e3eede65b97 Mon May 15 12:30:50 2023 -0700
    Fixing mm10 Net tracks issues reported by user, refs #31266
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.vertebrateChainNet.ra
  • lines changed 1, context: html, text, full: html, text
    af684480c4c6289683b34bde7fe32e3eede65b97 Mon May 15 12:30:50 2023 -0700
    Fixing mm10 Net tracks issues reported by user, refs #31266
• src/hg/makeDb/trackDb/mouse/mm9/cons30way.html
  • lines changed 1, context: html, text, full: html, text
    839b01e044a9a432355073358e79fbd44def0a65 Mon May 15 10:34:45 2023 -0700
    Removing text that is out of date in the Multiz Alignment & Conservation track methods section, refs #30073
• src/hg/makeDb/trackDb/mouse/mm9/multiz30way.html
  • lines changed 1, context: html, text, full: html, text
    839b01e044a9a432355073358e79fbd44def0a65 Mon May 15 10:34:45 2023 -0700
    Removing text that is out of date in the Multiz Alignment & Conservation track methods section, refs #30073
• src/hg/makeDb/trackDb/orangutan/ponAbe2/multiz8way.html
  • lines changed 1, context: html, text, full: html, text
    839b01e044a9a432355073358e79fbd44def0a65 Mon May 15 10:34:45 2023 -0700
    Removing text that is out of date in the Multiz Alignment & Conservation track methods section, refs #30073
• src/hg/makeDb/trackDb/rat/rn5/cons13way.html
  • lines changed 1, context: html, text, full: html, text
    839b01e044a9a432355073358e79fbd44def0a65 Mon May 15 10:34:45 2023 -0700
    Removing text that is out of date in the Multiz Alignment & Conservation track methods section, refs #30073
• src/hg/makeDb/trackDb/zebrafish/danRer6/multiz6way.html
  • lines changed 1, context: html, text, full: html, text
    839b01e044a9a432355073358e79fbd44def0a65 Mon May 15 10:34:45 2023 -0700
    Removing text that is out of date in the Multiz Alignment & Conservation track methods section, refs #30073
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 2, context: html, text, full: html, text
    ea24200cc80c5014166a4db138b811f80c378d2c Mon May 22 10:06:20 2023 -0700
    v449 preview1, refs #31125

• lines changed: 118
• files changed: 33