5c2aaf5c9e5cce3360e476917f7b8e09dc510b39 braney Fri May 26 10:51:05 2023 -0700 skip hub prefix on link to hgdownload for GTF files diff --git src/hg/hgTables/mainPage.c src/hg/hgTables/mainPage.c index 43268ee..817972e 100644 --- src/hg/hgTables/mainPage.c +++ src/hg/hgTables/mainPage.c @@ -382,31 +382,31 @@ hPrintf(" <OPTION VALUE=%s", ot->name); if (sameString(ot->name, outputType)) hPrintf(" SELECTED"); if (sameString(ot->name, outBed) || sameString(ot->name, outWigBed)) hPrintf(" id=\"outBed\""); hPrintf(">%s</OPTION>\n", ot->label); } hPrintf("</SELECT>\n"); hPrintf(" "); hPrintf("<DIV style='display:none; opacity:0.9; border: 1px solid #EEE; margin: 2px; padding: 4px' id='gffNote'>" "<b>Note:</b> Table Browser GTF files contain transcripts, but no gene identifiers or symbols.<br> " "If you are looking for fully formatted " "gene model files for use in genome analysis pipelines,<br>check the " "<a href='https://hgdownload.soe.ucsc.edu/goldenPath/%s/bigZips/genes'>bigZips/genes</a> " - "directory on our download server.</DIV>", database); + "directory on our download server.</DIV>", trackHubSkipHubName(database)); hPrintf("<DIV style='display:none; opacity:0.9; border: 1px solid #EEE; margin: 2px; padding: 4px' id='wigNote'>" "<b>Signal data points format:</b> The Table Browser outputs signal track data in " "<a href='../goldenPath/help/wiggle.html' target=_blank>wiggle</a> format by default. You can also use the " "Table Browser <b>filter</b> feature to designate a value threshold and then output that as BED format. The " "Table Browser will then create a BED file with an entry for every value that passes the filter. Our command line tool " "<a href=\"../goldenPath/help/bigWig.html#Extract\" target=_blank>bigWigToBedGraph</a> can also be used " "to convert wig files directly. Contact us at genome@soe.ucsc.edu for help with data extraction or conversion.</div>"); hPrintf(" "); // we should make an hgTables.js one day, this is ugly jsInline("function checkOutputNotes(event) {\n" "var outType=document.getElementById('outputTypeDropdown').value;\n" "if (outType==='gff')\n" " document.getElementById('gffNote').style.display='';\n" "else if (outType==='wigData')\n"