d3f09e41b76b680a22b29d6a1d5b6c8547695096 hiram Fri May 26 15:15:05 2023 -0700 some invertebrates became obsolete refs #29545 diff --git src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt index ff5d7a7..7b61a33 100644 --- src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt +++ src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt @@ -95,38 +95,38 @@ GCA_004027435.1_ArtJam_v1_BIUU mammals GCA_004027515.1_AntAmePen_v1_BIUU mammals GCA_004027675.1_CasCan_v1_BIUU mammals GCA_004027815.1_NycCou_v1_BIUU primates GCA_004027855.1_ChoDid_v1_BIUU mammals GCA_004027935.1_ChrAsi_v1_BIUU mammals GCA_004115215.3_mOrnAna1.pri.v3 mammals GCA_004115265.2_mRhiFer1_v1.p mammals GCA_004365145.1_OryAfe_v1_BIUU mammals GCA_006229205.1_meerkat_22Aug2017_6uvM2_HiC mammals GCA_007364275.2_fArcCen1 fish GCA_009663435.1_Callithrix_jacchus_cj1700_1.0 primates GCA_009762305.1_mZalCal1.pri mammals GCA_009764475.1_sPriPec2.pri vertebrate GCA_009764565.1_rDerCor1.pri vertebrate +GCA_009769485.1_bCygOlo1.alt birds GCA_009769545.1_fCycLum1.pri fish GCA_009769625.1_bCygOlo1.pri birds -GCA_009769485.1_bCygOlo1.alt birds GCA_009806435.2_UM_NZW_1.0 mammals GCA_009819505.1_bCatUst1.alt birds GCA_009819705.1_fHipHip1.pri fish -GCA_009873245.2_mBalMus1.v2 mammals GCA_009829125.1_fPerMag1.pri fish +GCA_009873245.2_mBalMus1.v2 mammals GCA_009914755.4_T2T-CHM13v2.0 primates GCA_010909765.1_sAmbRad1.pri vertebrate GCA_011004845.1_fEsoLuc1.pri fish GCA_011064685.1_ZJU_Sfru_1.0 invertebrate GCA_011100635.1_mTriVul1.pri mammals GCA_011762505.1_mArvNil1.pat.X mammals GCA_011762595.1_mTurTru1.mat.Y mammals GCA_012275295.1_bMelUnd1.mat.Z birds GCA_014108255.1_mRhiFer1.p mammals GCA_014356525.1_ASM1435652v1 invertebrate GCA_014839835.1_bDryPub1.pri birds GCA_014905235.2_Bmori_2016v1.0 invertebrate GCA_015227675.2_mRatBN7.2 mammals GCA_015227805.2_bHirRus1.pri.v2 birds GCA_016128335.1_ZJU1.0 birds @@ -184,79 +184,87 @@ GCF_000164845.3_VicPac3.1 mammals GCF_000165045.1_Callorhinchus_milii-6.1.3 vertebrate GCF_000182805.2_ASM18280v2 fungi GCF_000188115.4_SL3.0 plants GCF_000189315.1_Devil_ref_v7.0 mammals GCF_000208655.1_Dasnov3.0 mammals GCF_000215625.1_MusPutFur1.0 mammals GCF_000231095.1_Oryza_brachyantha.v1.4b plants GCF_000235385.1_SaiBol1.0 primates GCF_000236235.1_SpeTri2.0 mammals GCF_000241765.3_Chrysemys_picta_bellii-3.0.3 vertebrate GCF_000241765.4_Chrysemys_picta_BioNano-3.0.4 vertebrate GCF_000255335.1_Mocc_1.0 invertebrate GCF_000264685.3_Panu_3.0 primates GCF_000300575.1_Agabi_varbisH97_2 fungi +GCF_000326865.1_Helobdella_robusta_v1.0 invertebrate GCF_000340665.1_C.cajan_V1.0 plants GCF_000341935.1_Ccin1 invertebrate GCF_000344595.1_CheMyd_1.0 vertebrate GCF_000364345.1_Macaca_fascicularis_5.0 primates GCF_000365465.2_Ptep_2.0 invertebrate GCF_000442215.1_Lipotes_vexillifer_v1 mammals GCF_000471905.2_AMTR1.0 plants GCF_000495115.1_PopEup_1.0 plants +GCF_000503995.1_CerSol_1.0 invertebrate GCF_000511025.2_RefBeet-1.2.2 plants GCF_000687205.1_ASM68720v1 birds GCF_000690535.1_ASM69053v1 birds GCF_000691845.1_ASM69184v1 birds GCF_000695815.1_ASM69581v1 birds GCF_000699005.1_ASM69900v1 birds GCF_000699245.1_ASM69924v1 birds GCF_000700745.1_ASM70074v1 birds GCF_000709325.1_ASM70932v1 birds GCF_000709365.1_ASM70936v1 birds GCF_000738735.2_ASM73873v2 birds GCF_000747805.1_ChaPel_1.0 birds GCF_000764305.1_Hazt_2.0 invertebrate GCF_000806345.1_ASM80634v1 invertebrate GCF_000817695.2_Aradu1.1 plants GCF_000951615.1_common_carp_genome fish GCF_001458135.1_marMar2.1 mammals +GCF_001483705.1_ASM148370v1 invertebrate GCF_001531365.1_CcrdV1 plants GCF_001577835.1_Coturnix_japonica_2.0 birds +GCF_001594065.1_Ccosl1.0 invertebrate GCF_001594075.1_Tcor1.0 invertebrate GCF_001633185.1_ValleyOak3.0 plants GCF_001640805.1_ASM164080v1 fish GCF_001649575.1_ASM164957v1 fish +GCF_001652005.1_ASM165200v1 invertebrate GCF_001659605.1_Manihot_esculenta_v6 plants -GCF_001660625.2_IpCoco_1.2 fish GCF_001660625.1_IpCoco_1.2 fish +GCF_001660625.2_IpCoco_1.2 fish GCF_001663975.1_Xenopus_laevis_v2 vertebrate GCF_001687245.1_Rhagoletis_zephyria_1.0 invertebrate GCF_001698545.1_ASM169854v1 primates GCF_001704415.1_ARS1 mammals GCF_001890085.1_ASM189008v1 mammals GCF_001891065.1_H_comes_QL1_v1 fish GCF_002007445.1_ASM200744v2 mammals GCF_002021735.1_Okis_V1 fish +GCF_002093755.1_Dser1.0 invertebrate GCF_002162155.1_WEW_v2.0 plants GCF_002201575.1_ASM220157v1 mammals GCF_002263795.1_ARS-UCD1.2 mammals +GCF_002532875.1_vjacob_1.0 invertebrate +GCF_002571385.1_Stylophora_pistillata_v1 invertebrate GCF_002706865.1_ASM270686v1 invertebrate GCF_002776525.2_ASM277652v2 primates -GCF_002776525.4_ASM277652v4 primates GCF_002776525.3_ASM277652v3 primates +GCF_002776525.4_ASM277652v4 primates GCF_002806865.1_ASM280686v2 plants GCF_002814215.1_Sedor1 fish GCF_002837175.2_ASM283717v2 mammals GCF_002870075.1_Lsat_Salinas_v7 plants GCF_002870075.2_Lsat_Salinas_v7 plants GCF_002870075.3_Lsat_Salinas_v8 plants GCF_002906115.1_CorkOak1.0 plants GCF_002922805.1_Om_v0.7.RACA fish GCF_002940915.1_ASM294091v2 mammals GCF_002994745.1_RchiOBHm-V2 plants GCF_003031525.1_Neophocaena_asiaeorientalis_V1 mammals GCF_003227715.1_Hsal_v8.5 invertebrate GCF_003584765.1_ASM358476v1 mammals GCF_003668045.1_CriGri-PICR mammals GCF_003676075.1_ASM367607v1 mammals @@ -266,53 +274,57 @@ GCF_003957565.1_bTaeGut1_v1.p birds GCF_004027225.1_bStrHab1_v1.p birds GCF_004115215.1_mOrnAna1.p.v1 mammals GCF_004115265.1_mRhiFer1_v1.p mammals GCF_004118075.1_ASM411807v1 plants GCF_004126475.1_mPhyDis1_v1.p mammals GCF_004153925.1_Obicornis_v3 invertebrate GCF_004382195.1_ASM438219v1 invertebrate GCF_004664715.1_Pero_0.1 mammals GCF_005281655.1_TAMU_Nfulva_1.0 invertebrate GCF_005508785.1_pea_aphid_22Mar2018_4r6ur invertebrate GCF_006149115.1_Oner_1.0 fish GCF_007474595.1_mLynCan4_v1.p mammals GCF_008315115.1_SLUC_FBN_1 fish GCF_008831285.1_ASM883128v1 plants +GCF_009650485.1_drosAlbom15112-1751.03v1 invertebrate GCF_009764565.2_rDerCor1.pri.v3 vertebrate GCF_009819885.1_bCatUst1.pri birds GCF_009828535.1_HMol primates GCF_009829125.1_fPerMag1.pri fish GCF_009858895.2_ASM985889v3 viral GCF_010645085.1_ASM1064508v1 vertebrate GCF_010909765.1_sAmbRad1.pri vertebrate GCF_011064685.1_ZJU_Sfru_1.0 invertebrate GCF_012460135.1_BPBGC_Mater_1.0 birds GCF_013339695.1_ASM1333969v1 invertebrate GCF_013377495.1_Cygnus_atratus_primary_v1.0 birds +GCF_014805625.1_Yale_Gfus_2 invertebrate GCF_014824575.1_WHU_Shon_v2 mammals GCF_014898055.1_MPIMG_talOcc4 mammals GCF_014898055.2_MPIMG_talOcc4v2 mammals GCF_014905685.1_NemWhi1 fish GCF_015227805.1_bHirRus1.pri.v2 birds +GCF_015228065.1_NSTDA_Pmon_1 invertebrate GCF_015237465.1_rCheMyd1.pri vertebrate GCF_016086655.2_UVic_Lsal_1.1 invertebrate GCF_016699345.1_BCM_Sbol_2.0 primates GCF_016700215.1_bGalGal1.pat.whiteleghornlayer.GRCg7w birds GCF_016746245.1_Prin_Dsan_1.0 invertebrate GCF_016746365.1_Prin_Dyak_Tai18E2_2.0 invertebrate GCF_016746395.1_Prin_Dsim_3.0 invertebrate +GCF_016801865.1_TS_Cpip_V1 invertebrate GCF_016920785.1_Ixodes_scapularus_ComboLowHiFi invertebrate GCF_017639655.1_bFalNau1.pat birds GCF_021288785.1_ASM2128878v2 mammals GCF_900094665.1_CAROLI_EIJ_v1.1 mammals GCF_900246225.1_fAstCal1.2 fish GCF_900324465.1_fAnaTes1.1 fish GCF_900324465.2_fAnaTes1.2 fish GCF_900324485.1_fMasArm1.1 fish GCF_900496995.1_bAquChr1.2 birds GCF_900634625.1_fParRan2.1 fish GCF_900634775.1_fGouWil2.1 fish GCF_900634795.2_fBetSpl5.2 fish GCF_900700375.1_fDenClu1.1 fish GCF_900700415.1_Ch_v2.0.2 fish GCF_900747795.1_fErpCal1.1 vertebrate