dccfa46e499c59cc36ba8591dd4f44e3927d966a lrnassar Wed May 24 16:30:59 2023 -0700 Re-adding evaSnp3, no RM diff --git src/hg/makeDb/trackDb/trackDb.ra src/hg/makeDb/trackDb/trackDb.ra index d6b6819..17c8021 100644 --- src/hg/makeDb/trackDb/trackDb.ra +++ src/hg/makeDb/trackDb/trackDb.ra @@ -2994,34 +2994,33 @@ track tandemDups parent tanDups on shortLabel Tandem Dups longLabel Paired exactly identical sequence survey over entire genome assembly track tantan shortLabel tantan Repeats longLabel Repeats by tantan group varRep visibility hide type bed 3 . track evaSnp shortLabel EVA SNP Release 3 longLabel Short Genetic Variants from European Variant Archive Release 3 -release alpha type bigBed 9 + group varRep -visibility dense +visibility hide itemRgb on mouseOver $ref>$alt $ucscClass $aaChange bigDataUrl /gbdb/$D/bbi/evaSnp.bb url https://www.ebi.ac.uk/eva/?variant&accessionID=$$ filterValues.varClass deletion|Deletion,delins|Deletion-Insertion,insertion|Insertion,multipleNucleotideSubstitution|Multiple nucleotide substitution,substitution|Substitution,sequence alteration|Sequence alteration filterLabel.varClass Variant class from EVA SO term filterLabel.ucscClass Functional effect per UCSC Variant Annotation filterValues.ucscClass downstream_gene_variant|Downstream gene variant,upstream_gene_variant|Upstream gene variant,intron_variant|Intron variant,NMD_transcript_variant|Nonsense-mediated mRNA decay (NMD) variant,5_prime_UTR_variant|5 prime UTR variant,3_prime_UTR_variant|3 prime UTR variant,missense_variant|Missense variant,synonymous_variant|Synonymous variant,non_coding_transcript_exon_variant|Non-coding transcript exon variant,no_sequence_alteration|No sequence alteration,splice_region_variant|Splice region variant,frameshift_variant|Frameshift variant,stop_gained|Stop gained,splice_acceptor_variant|Splice acceptor variant,inframe_deletion|Inframe deletion,inframe_insertion|Inframe insertion,splice_donor_variant|Splice donor variant,coding_sequence_variant|Coding sequence variant,initiator_codon_variant|Initiator codon variant,stop_lost|Stop lost,stop_retained_variant|Stop retained variant,intergenic_variant|Intergenic variant filterType.ucscClass multipleListOnlyOr filterValues.itemRgb 255,,0,,0|Protein-altering and splice variants,0,,128,,0|Synonymous variants,0,,0,,255|Non-coding transcripts or UTR variants,0,,0,,0|Intergenic and intronic variants filterLabel.itemRgb General variant types by color grouping maxWindowCoverage 250000 maxItems 1000000 searchTable evaSnp