68c9515cb37ea293c7eeb106c8761ed1daea644b
gperez2
  Wed Jun 21 12:15:44 2023 -0700
Adding cronjob scripts to run hubCheck for Public Hubs, refs #29319

diff --git src/utils/qa/hubCheckPublicHubs.sh src/utils/qa/hubCheckPublicHubs.sh
new file mode 100755
index 0000000..85aff58
--- /dev/null
+++ src/utils/qa/hubCheckPublicHubs.sh
@@ -0,0 +1,17 @@
+#!/usr/bin/env bash
+
+# Program Header
+# Name:   Gerardo Perez
+# Description: A program that runs hubCheck for all the public hubs on the RR and outputs it into a file
+#
+# hubCheckPublicHubs.sh
+#
+
+echo '#############################################' >> /hive/users/qateam/hubCheckCronArchive/`date +'%Y'`/hubCheck_output
+for output in $(hgsql -h genome-centdb -Ne "select hubUrl from hubPublic" hgcentral | tail -n +2)
+do
+    echo $output >> /hive/users/qateam/hubCheckCronArchive/`date +'%Y'`/hubCheck_output
+    hubCheck $output >> /hive/users/qateam/hubCheckCronArchive/`date +'%Y'`/hubCheck_output
+    echo '#############################################' >> /hive/users/qateam/hubCheckCronArchive/`date +'%Y'`/hubCheck_output
+done
+