9d0ede0c39bad18b7ceedca54144ad46b01b7cd6 gperez2 Sun Jun 11 23:58:33 2023 -0700 Adding a selenium python script for qa testing, refs #30817 diff --git src/utils/qa/qaTestScript.py src/utils/qa/qaTestScript.py new file mode 100755 index 0000000..a903b45 --- /dev/null +++ src/utils/qa/qaTestScript.py @@ -0,0 +1,557 @@ +#!/usr/bin/env python3 + +# Program Header +# Name: Gerardo Perez +# Description: A program that runs Selenium in either headless mode or local mode (window popup) +# to run test cases for a machine (hgwdev, hgwbeta, and the RR). +# +# qaTestScript.py +# +# +# Development Environment: VIM - Vi IMproved version 7.4.629 +# Version: Python 3.6.5 +# +# +# To run local mode (window popup), you will need to install chromedriver locally. +# Ex. /Users/gerardoperez/Downloads/chromedriver +# You can download chromedriver from https://chromedriver.chromium.org/downloads +# +# IGNORE the following error notes: +# For error +# (The process started from chrome location +# /hive/users/lrnassar/selenium/chrome/opt/google/chrome/google-chrome is no longer running, +# so ChromeDriver is assuming that Chrome has crashed.) +# import os +# os.environ['TMPDIR'] = "/hive/users/lrnassar/selenium/chrom113/TMP" +# ^IGNORE + +# Imports module +from selenium.webdriver.chrome.options import Options +from selenium.webdriver.common.by import By +from selenium.webdriver.common.action_chains import ActionChains +from selenium import webdriver +from selenium.webdriver.common.keys import Keys +from selenium.webdriver.support.ui import Select +from selenium.webdriver.support.ui import WebDriverWait +from selenium.webdriver.support import expected_conditions as EC +from selenium.common.exceptions import NoSuchElementException +from selenium.common.exceptions import NoAlertPresentException +import unittest, time, re, sys, argparse + +def initialize_driver(headless): + """Initiates which webdriver to run for headless mode or local mode""" + options = Options() + if headless: + options.add_argument('--headless') + options.add_argument('--no-sandbox') + options.add_argument("--headless") + options.add_argument('--disable-dev-shm-usage') + options.add_argument("--start-maximized") + options.add_argument("--window-size=1920,1080") + options.binary_location = '/hive/users/lrnassar/selenium/chrom113/chromeInstall/opt/google/chrome/google-chrome' + driver = webdriver.Chrome('/hive/users/lrnassar/selenium/chrom113/chromedriver', options = options) + else: + # Asks user for the WebDriver location + webdriver_location = input("Enter the WebDriver location: ") + driver = webdriver.Chrome(executable_path=webdriver_location) + return driver + +# Creates the command-line argument parser +parser = argparse.ArgumentParser(description='Selenium script with headless/local mode.') +parser.add_argument('--headless', action='store_true', help='Activate headless mode') +parser.add_argument('--machine', type=str, help='Specify the machine URL') + +# Parses the command-line arguments +args = parser.parse_args() + +# Asks the user for the website URL if not provided as a command-line argument +if not args.machine: + args.machine = input("Enter the machine URL (Ex. https://hgwbeta.soe.ucsc.edu):") + +# Initializes the driver based on the chosen mode +driver = initialize_driver(args.headless) + +# Loads the machine website +machine= args.machine + +def cartReset(): + """The function does a cart reset""" + a = ActionChains(driver) + #identify element + m = driver.find_element_by_link_text("Genome Browser") + #hover over element + a.move_to_element(m).perform() + #identify sub menu element + n = driver.find_element_by_link_text("Reset All User Settings") + # hover over element and click + a.move_to_element(n).click().perform() + driver.implicitly_wait(2) + +# Tests the Gateway page and home page +driver.get(machine + "/cgi-bin/hgGateway") +driver.get(machine + "/index.html") +driver.find_element_by_link_text("Home").click() +driver.find_element_by_link_text("Genomes").click() +driver.get(machine + "/cgi-bin/hgGateway") +driver.find_element_by_xpath("//div[@id='selectSpeciesSection']/div[2]/div[2]/div[2]/div").click() + + +# Tests mm39 hgTracks +driver.get(machine + "/cgi-bin/hgTracks?db=mm39") +#cartReset() + + +# Tests hg38 hgGene +driver.get(machine + "/cgi-bin/hgTracks?db=hg38") +driver.find_element_by_xpath("//td[@id='td_data_knownGene']/div[2]/map/area[5]").click() + +# Tests hg19 hgGene +driver.get(machine + "/cgi-bin/hgTracks?db=hg19") +driver.find_element_by_xpath("//td[@id='td_data_knownGene']/div[2]/map/area[5]").click() + +# Tests mm10 hgGene +driver.get(machine + "/cgi-bin/hgTracks?db=mm10") +driver.find_element_by_xpath("//td[@id='td_data_knownGene']/div[2]/map/area[5]").click() + +# Tests multi-region for hg38 +cartReset() +driver.get(machine + "/cgi-bin/hgTracks?db=hg38") +driver.find_element_by_id("positionInput").clear() +driver.find_element_by_id("positionInput").send_keys("chr7 192500 727300") +driver.find_element_by_id("goButton").click() +driver.find_element_by_name("hgTracksConfigMultiRegionPage").click() +driver.find_element_by_xpath("(//input[@id='virtModeType'])[4]").click() +driver.find_element_by_id("multiRegionsBedInput").send_keys("chr7 192570 260772 NM_020223.4\nchr7 290169 291488 NM_001374838.1\nchr7 497257 519846 NM_033023.5\nchr7 549197 727281 NM_001164760.2") +driver.find_element_by_name("topSubmit").click() +driver.find_element_by_xpath("//td[@id='td_data_ncbiRefSeqCurated']/div[2]/map/area").click() +driver.find_element_by_xpath("//td[@id='td_data_ncbiRefSeqCurated']/div[2]/map/area[2]").click() + + +# Tests hgGeneGraph +driver.get(machine + "/cgi-bin/hgGeneGraph") +driver.find_element_by_name("gene").clear() +driver.find_element_by_name("gene").send_keys("sirt1") +driver.find_element_by_name("1").click() +driver.find_element_by_id("dropdownMenu1").click() +driver.find_element_by_link_text("GNF2 Expression").click() +driver.find_element_by_id("edge4").click() +driver.find_element_by_xpath("//a[contains(@href, 'hgGeneGraph?supportLevel=text&geneCount=25&geneAnnot=gnf2&1=OK&lastGene=SIRT1&gene=SIRT1')]") +cartReset() + +# Tests hgVai +driver.get(machine + "/cgi-bin/hgVai?hgva_agreedToDisclaimer=1") +driver.find_element_by_id("subDisclmAgrd").click() + +# Tests hgc/hgGene for hg38 +driver.get(machine + "/cgi-bin/cartReset") +driver.get(machine + "/cgi-bin/hgGateway?db=hg38") +driver.get(machine + "/cgi-bin/hgGene?hgg_gene=ENST00000370314.9&hgg_chrom=chrX&hgg_start=152166233&hgg_end=152451315&hgg_type=knownGene&db=hg38") +driver.find_element_by_link_text("Sequence and Links").click() +driver.find_element_by_link_text("Genomic Sequence (chrX:152,166,234-152,451,315)").click() +driver.find_element_by_name("submit").click() + +# Tests hub on canFam3 +cartReset() +driver.get(machine + "/cgi-bin/hgGateway?db=canFam3") +driver.get(machine + "/cgi-bin/hgTracks?hubUrl=https://data.broadinstitute.org/vgb/dog/dog/hub.txt&genome=canFam3&position=lastDbPos") + +# Tests non-human/mouse (oviAri4) on Table Browser +cartReset() +driver.get(machine + "/cgi-bin/hgGateway?db=oviAri4") +a = ActionChains(driver) +# identify element +m = driver.find_element_by_id("tools3") +# hover over element +a.move_to_element(m).perform() +# identify sub menu element +n = driver.find_element_by_id("tableBrowserMenuLink") +# hover over element and click +a.move_to_element(n).click().perform() +driver.find_element_by_id("hgta_doSchema").click() +driver.get(machine + "/cgi-bin/hgTables?db=oviAri4") +driver.find_element_by_name("hgta_doSummaryStats").click() + +# Tests a session with custom tracks, multiRegion, and assembly hub +cartReset() +driver.get(machine + "/cgi-bin/hgTracks?hgS_doOtherUser=submit&hgS_otherUserName=brianlee&hgS_otherUserSessionName=Custom_Tracks_AssemblyHub_MultiRegion_TrackCollection_BigWigs") +driver.find_element_by_xpath("//td[@id='td_data_ct_UserTrack_3545']/div[2]/map/area[4]").click() +driver.find_element_by_link_text("chr1:33719895-33742564").click() + +# Tests a DNA search on hgTracks +cartReset() +driver.get(machine + "/cgi-bin/hgTracks?db=hg38&hideTracks=1") +driver.get(machine + "/cgi-bin/hgTracks") +driver.find_element_by_id("positionInput").clear() +driver.find_element_by_id("positionInput").send_keys("GTATGTAGCCACGGAGCACCATTACCTGTCACCATTACCTGAATGGCTA") +driver.find_element_by_name("goButton").click() +driver.find_element_by_xpath("//a[contains(text(),'browser')]").click() + +# Tests custom tracks on hg19 +driver.get(machine + "/cgi-bin/hgGateway?db=hg19") +a = ActionChains(driver) +#identify element +m = driver.find_element_by_id("myData") +##hover over element +a.move_to_element(m).perform() +#identify sub menu element +n = driver.find_element_by_id("customTracksMenuLink") +# hover over element and click +a.move_to_element(n).click().perform() +driver.find_element_by_name("hgct_customText").clear() +driver.find_element_by_name("hgct_customText").send_keys("https://hgwdev-gperez2.gi.ucsc.edu/~gperez2/testing/hgCustom_testing/examples.WITHOUT.FTPS.txt") +driver.find_element_by_name("Submit").click() +driver.find_element_by_name("submit").click() +driver.find_element_by_id("p_btn_ct_hicExampleTWO_9382").click() +driver.find_element_by_name("ct_hicExampleTWO_9382.color").click() + +# Tests small custom track to click into hgTrackUi +cartReset() +driver.get(machine + "/cgi-bin/hgGateway?db=hg19") +a = ActionChains(driver) +#identify element +m = driver.find_element_by_id("myData") +##hover over element +a.move_to_element(m).perform() +#identify sub menu element +n = driver.find_element_by_id("customTracksMenuLink") +# hover over element and click +a.move_to_element(n).click().perform() +driver.find_element_by_name("hgct_customText").clear() +driver.find_element_by_name("hgct_customText").send_keys("https://hgwdev.gi.ucsc.edu/~brianlee/examples/customTracks/newTypes.txt") +driver.find_element_by_name("Submit").click() +driver.find_element_by_name("submit").click() +#if 'barChart Example One' in driver.page_source: +# print("Add Custom Tracks") + +# click into hgTrackUi of customTrack +driver.find_element_by_xpath("//td[@id='td_data_ct_barChartExampleOne_4976']/div[2]/map/area[29]").click() +driver.find_element_by_xpath("//div[@id='firstSection']/table/tbody/tr/td/table/tbody/tr/td/table/tbody/tr[2]/td[2]/p[2]/a").click() +driver.find_element_by_xpath("//a[contains(text(),'Data schema/format description and download')]") +driver.get(machine + "/cgi-bin/hgTracks") +driver.find_element_by_xpath("//td[@id='td_data_ct_interactExample_4634']/div[2]/map/area[5]").click() +driver.find_element_by_xpath("//div[@id='firstSection']/table/tbody/tr/td/table/tbody/tr/td/table/tbody/tr[2]/td[2]/p[2]/a").click() +driver.find_element_by_xpath("//a[contains(text(),'Data schema/format description and download')]") + +## Tests chromAlias hg38 custom track +cartReset() +driver.get(machine + "/cgi-bin/hgGateway?db=hg38") +a = ActionChains(driver) +#identify element +m = driver.find_element_by_id("myData") +##hover over element +a.move_to_element(m).perform() +#identify sub menu element +n = driver.find_element_by_id("customTracksMenuLink") +# hover over element and click +a.move_to_element(n).click().perform() +driver.find_element_by_name("hgct_customText").clear() +driver.find_element_by_name("hgct_customText").send_keys("https://hgwdev-gperez2.gi.ucsc.edu/~gperez2/testing/selenium/chrmAliasTestHg38_track") +driver.find_element_by_name("Submit").click() +driver.find_element_by_name("submit").click() +# click into hgTrackUi of customTrack + +driver.find_element_by_xpath("//td[@id='td_data_ct_chrmAliasTestHg38_4656']/div[2]/map/area").click() +driver.find_element_by_xpath("//div[@id='firstSection']/table/tbody/tr/td/table/tbody/tr/td/table/tbody/tr[2]/td[2]/p/a").click() +driver.find_element_by_xpath("//a[contains(text(),'Data schema/format description and download')]") + +# Tests mm10 ENCODE hub +cartReset() +driver.get(machine + "/cgi-bin/hgTracks?db=mm10&hideTracks=1") +driver.get(machine + "/cgi-bin/hgGateway?db=mm10&hubUrl=https://www.encodeproject.org/experiments/ENCSR736GVO/@@hub/hub.txt") +driver.get(machine + "/cgi-bin/hgHubConnect?#unlistedHubs") +driver.find_element_by_link_text("Connected Hubs").click() +driver.get(machine + "/cgi-bin/hgTracks") +driver.find_element_by_name("hgt.positionInput").clear() +driver.find_element_by_name("hgt.positionInput").send_keys("chr12:56,694,976-56,714,605") +driver.find_element_by_name("goButton").click() +driver.find_element_by_name("hgt.out1").click() + +# Tests Public Hub search +driver.get(machine + "/cgi-bin/hgHubConnect?hubSearchTerms=wuhCor1") +driver.get(machine + "/cgi-bin/hgHubConnect?hubSearchTerms=methpipe") +driver.get(machine + "/cgi-bin/hgHubConnect?hubSearchTerms=GCF") + +# Tests AssemblyHub search +cartReset() +driver.get(machine + "/cgi-bin/hgGateway?hubUrl=https://genome-test.gi.ucsc.edu/gbdb/hubs/genbank/vertebrate_mammalian/hub.ncbi.txt&genome=GCA_000493695.1_BalAcu1.0&position=lastDbPos") +driver.get(machine + "/cgi-bin/hgTracks") +driver.find_element_by_name("hgt.positionInput").clear() +driver.find_element_by_name("hgt.positionInput").send_keys("ATDI01079686") +driver.find_element_by_name("goButton").click() +time.sleep(3) +driver.find_element_by_id("hgt.out1").click() +time.sleep(3) +# Tests track hub annotation for specific machine +if 'hub_26485' in driver.page_source: + driver.find_element_by_xpath("//td[@id='td_data_hub_26485_assembly']/div[2]/map/area[3]").click() +elif 'hub_11450' in driver.page_source: + driver.find_element_by_xpath("//td[@id='td_data_hub_11450_assembly']/div[2]/map/area[3]").click() + +else: + driver.find_element_by_xpath("//td[@id='td_data_hub_4081003_assembly']/div[2]/map/area[3]").click() +time.sleep(2) + +# Tests HGVS searches +cartReset() +driver.get(machine + "/cgi-bin/hgTracks?db=hg38") +driver.find_element_by_name("hgt.positionInput").clear() +driver.find_element_by_name("hgt.positionInput").send_keys("NM_000310.4(PPT1):c.271_287del17insTT") +driver.find_element_by_id("goButton").click() +time.sleep(2) +driver.find_element_by_xpath("//td[@id='td_data_ncbiRefSeqCurated']/div[2]/map/area[12]").click() +driver.get(machine + "/cgi-bin/hgTracks?db=hg38") +driver.find_element_by_name("hgt.positionInput").clear() +driver.find_element_by_name("hgt.positionInput").send_keys("NM_007262.5(PARK7):c.-24+75_-24+92dup") +driver.find_element_by_id("goButton").click() +time.sleep(2) +driver.find_element_by_name("hgt.positionInput").clear() +driver.find_element_by_name("hgt.positionInput").send_keys("NM_006172.4(NPPA):c.456_*1delAA") +driver.find_element_by_id("goButton").click() +time.sleep(2) +driver.find_element_by_name("hgt.positionInput").clear() +driver.find_element_by_name("hgt.positionInput").send_keys("MYH11:c.503-14_503-12del") +driver.find_element_by_id("goButton").click() +time.sleep(2) +driver.find_element_by_name("hgt.positionInput").clear() +driver.find_element_by_name("hgt.positionInput").send_keys("NM_198576.4(AGRN):c.1057C>T") +driver.find_element_by_id("goButton").click() +time.sleep(2) +driver.find_element_by_name("hgt.positionInput").clear() +driver.find_element_by_name("hgt.positionInput").send_keys("NM_198056.3:c.1654G>T") +driver.find_element_by_id("goButton").click() +time.sleep(2) +driver.find_element_by_name("hgt.positionInput").clear() +driver.find_element_by_name("hgt.positionInput").send_keys("NP_002993.1:p.Asp92Glu") +driver.find_element_by_id("goButton").click() +time.sleep(2) +driver.find_element_by_name("hgt.positionInput").clear() +driver.find_element_by_name("hgt.positionInput").send_keys("NP_002993.1:p.D92E") +driver.find_element_by_id("goButton").click() +time.sleep(2) +driver.find_element_by_name("hgt.positionInput").clear() +driver.find_element_by_name("hgt.positionInput").send_keys("BRCA1 Ala744Cys") +driver.find_element_by_id("goButton").click() +time.sleep(2) +driver.find_element_by_xpath("//td[@id='td_data_ncbiRefSeqCurated']/div[2]/map/area[4]").click() +driver.get(machine + "/cgi-bin/hgTracks?db=hg38") +driver.find_element_by_name("hgt.positionInput").clear() +time.sleep(3) +driver.find_element_by_name("hgt.positionInput").send_keys("NM_000828.5:c.-2G>A") +driver.find_element_by_id("goButton").click() +time.sleep(3) + +# Tests hgBlat +cartReset() +driver.get(machine + "/cgi-bin/hgGateway?db=hg19") +a = ActionChains(driver) +#identify element +m = driver.find_element_by_id("tools3") +#hover over element +a.move_to_element(m).perform() +#identify sub menu element +n = driver.find_element_by_id("blatMenuLink") +# hover over element and click +a.move_to_element(n).click().perform() +driver.find_element_by_name("userSeq").clear() +driver.find_element_by_name("userSeq").send_keys("AACAAAATCAAACTGTTTTTGTTGGACAATTCTCTGTTAAGCAGCTATAA\\nGCTGAATGACATTAACCGCAAAATGTAACCATAAAGGCCATAAACCCGAC\\nATTGTTAATTAATTAAATGCCTCATTAACTTTTTTAAAAACATGATTTAT\\nTCGATTCATAGAAAACTTAACCATCACTACTAAATGCACACACATGCGGT\\nTCCACATTGGCATCTTAGCCTAAGAACAGACAGGTTCAACTGTAACTGGC\\nCTTTCAGGTGGTCTATTACAGATCTGAAGACAGAGGGTGTTTCTAAACCT\\nCAAGAACCAGATTAACAGAAAACAAAGCTTGAGCAGCCTTTTTATTGCAT\\nGTGGTATCTTTTTAGCTAAGCAGAAGACAATGATAAAGAGGGGTTTTGGG\\nAAACCTCTCCCAAAGCTGTGCATTCATACCGTACCTTATCCTGTTAAGCA\\nAACTGTTCTTTTATTTTAAAGGGTTTACACTGCCACATCTGAATGGACTA") +driver.find_element_by_name("Submit").click() +time.sleep(3) +driver.find_element_by_xpath("//div[@id='firstSection']/table/tbody/tr/td/table/tbody/tr/td/table/tbody/tr[2]/td[2]/div[2]/pre/a").click() +driver.find_element_by_xpath("//td[@id='td_data_hgUserPsl']/div[2]/map/area").click() +time.sleep(3) +driver.find_element_by_xpath("//div[@id='firstSection']/table/tbody/tr/td/table/tbody/tr/td/table/tbody/tr[2]/td[2]/a").click() +time.sleep(3) +driver.get(machine + "/cgi-bin/hgGateway?db=hg38") + + +# Tests hgBlat for alt patch sequence +driver.get(machine + "/cgi-bin/hgGateway?db=hg38") +a = ActionChains(driver) +#identify element +m = driver.find_element_by_id("tools3") +#hover over element +a.move_to_element(m).perform() +#identify sub menu element +n = driver.find_element_by_id("blatMenuLink") +# hover over element and click +a.move_to_element(n).click().perform() +driver.find_element_by_name("userSeq").clear() +driver.find_element_by_name("userSeq").send_keys("CACACTGTGGATGACATCCAGCAGATCGCTGCTGCGCTGGCCCAGTGCATGGTAGGATGGCCCCACATGCTCTCCCCGCCCCGCATGCCTGCCAGGGTACTGGGTTCAGCCCCCCAGGGCAGACGGGCAGCTTGGCCGAGGAGCTGAGCCTCCAGCCTGGGC") +driver.find_element_by_name("Submit").click() +time.sleep(3) +driver.find_element_by_xpath("//div[@id='firstSection']/table/tbody/tr/td/table/tbody/tr/td/table/tbody/tr[2]/td[2]/div[2]/pre/a").click() +time.sleep(3) +driver.find_element_by_xpath("//td[@id='td_data_altSeqLiftOverPsl']/div[2]/map/area[8]").click() +time.sleep(3) +driver.find_element_by_link_text("Show chr16_KI270853v1_alt placed on its chromosome").click() +time.sleep(3) + +# Tests hgBlat for fix patch sequence +cartReset() +driver.get(machine + "/cgi-bin/hgGateway?db=hg38") +a = ActionChains(driver) +#identify element +m = driver.find_element_by_id("tools3") +#hover over element +a.move_to_element(m).perform() +#identify sub menu element +n = driver.find_element_by_id("blatMenuLink") +# hover over element and click +a.move_to_element(n).click().perform() +driver.find_element_by_name("userSeq").clear() +driver.find_element_by_name("userSeq").send_keys("GTTTTTTCTCCTATGGCATGCAGGCGACATGTTACTTCCTATTCCCATAAACCCTCCACTGTAGGATTAACACCTAAGACACCAACCAAGACAAAAAAGATATGACCCTTGGT") +driver.find_element_by_name("Submit").click() +time.sleep(3) +driver.find_element_by_xpath("//div[@id='firstSection']/table/tbody/tr/td/table/tbody/tr/td/table/tbody/tr[2]/td[2]/div[2]/pre/a").click() +time.sleep(3) +driver.find_element_by_xpath("//td[@id='td_data_fixSeqLiftOverPsl']/div[2]/map/area[4]").click() +driver.find_element_by_link_text("Show chr1_MU273333v1_fix placed on its chromosome").click() +time.sleep(3) + +# Tests hgPcr for hg38 +driver.get(machine + "/cgi-bin/hgGateway?db=hg38") +a = ActionChains(driver) +#identify element +m = driver.find_element_by_id("tools3") +#hover over element +a.move_to_element(m).perform() +#identify sub menu element +n = driver.find_element_by_id("ispMenuLink") +# hover over element and click +a.move_to_element(n).click().perform() +driver.find_element_by_name("wp_f").clear() +driver.find_element_by_name("wp_f").send_keys("AACAAAATCAAACTGTTTTTGTTGGACAATTCTCTGTTAAGCAGCTATAA") +driver.find_element_by_name("wp_r").clear() +driver.find_element_by_name("wp_r").send_keys("AACTGTTCTTTTATTTTAAAGGGTTTACACTGCCACATCTGAATGGACTA") +driver.find_element_by_name("wp_flipReverse").click() +driver.find_element_by_name("Submit").click() +time.sleep(3) +driver.find_element_by_link_text("chrX:40059679+40060178").click() +time.sleep(3) + +# Tests hgConvert +driver.get(machine + "/cgi-bin/hgTracks") +a = ActionChains(driver) +#identify element +m = driver.find_element_by_id("view") +#hover over element +a.move_to_element(m).perform() +#identify sub menu element +n = driver.find_element_by_id("convertMenuLink") +# hover over element and click +a.move_to_element(n).click().perform() +driver.find_element_by_name("hglft_doConvert").click() +driver.find_element_by_link_text("chrX:39460925-39461424").click() +driver.find_element_by_css_selector("#tools3 > span").click() + +# Tests hgLiftOver for mm39 +cartReset() +driver.get(machine + "/cgi-bin/hgTracks?db=mm39") +a = ActionChains(driver) +#identify element +m = driver.find_element_by_id("tools3") +#hover over element +a.move_to_element(m).perform() +#identify sub menu element +n = driver.find_element_by_id("liftOverMenuLink") +# hover over element and click +a.move_to_element(n).click().perform() +driver.find_element_by_name("hglft_userData").clear() +driver.find_element_by_name("hglft_userData").send_keys("chr11:101,379,590-101,442,705") +driver.find_element_by_name("Submit").click() +time.sleep(3) +driver.find_element_by_link_text("View Conversions") + +# Tests hgPcr target Genes Track (data changes with data pushes) +cartReset() +driver.get(machine + "/cgi-bin/hgTracks?db=hg38&hideTracks=1") +driver.get(machine + "/cgi-bin/hgGateway?db=hg38&wp_target=hg38KgSeqV41") #will be hg38KgSeqV41 +a = ActionChains(driver) +#identify element +m = driver.find_element_by_id("tools3") +#hover over element +a.move_to_element(m).perform() +#identify sub menu element +n = driver.find_element_by_id("ispMenuLink") +# hover over element and click +a.move_to_element(n).click().perform() +driver.find_element_by_name("wp_f").clear() +driver.find_element_by_name("wp_f").clear() +driver.find_element_by_name("wp_f").send_keys("TTTTCCTAATAATGCTTGTCTTGGTCTTGTT") +driver.find_element_by_name("wp_r").clear() +driver.find_element_by_name("wp_r").send_keys("ACACACACAGAAAGACACACACAGACACAAAA") +driver.find_element_by_name("wp_flipReverse").click() +driver.find_element_by_name("wp_append").click() +driver.find_element_by_name("wp_size").clear() +driver.find_element_by_name("wp_size").send_keys("40000") +select = Select(driver.find_element_by_name("wp_target")) +select.select_by_visible_text("GENCODE Genes") +driver.find_element_by_name("Submit").click() +driver.find_element_by_link_text("ENST00000644422.2__ABO:77+1295").click() +time.sleep(3) +driver.find_element_by_xpath("//td[@id='td_data_hgPcrResult']/div[2]/map/area[2]").click() + +# Tests GenArk Rabbit Hub +cartReset() +driver.get(machine + "/cgi-bin/hgTracks?hubUrl=https://hgdownload.soe.ucsc.edu/hubs/GCF/000/003/625/GCF_000003625.3/hub.txt&genome=GCF_000003625.3") +driver.get(machine + "/cgi-bin/hgTracks?hideTracks=1") +driver.find_element_by_id("positionInput").clear() +driver.find_element_by_id("positionInput").send_keys("HOPX") +driver.find_element_by_id("goButton").click() +time.sleep(3) +driver.find_element_by_link_text("HOPX").click() + +# Tests Assembly Hubs at GitHub +cartReset() +driver.get(machine + "/cgi-bin/hgTracks?genome=daph&hubUrl=https://raw.githubusercontent.com/ucsc-browser/assemblyHubEx/master/Daphnia/hubExamples/hubAssembly/daph/hub.txt&position=scaffold_1%3A35591-35626") +driver.get(machine + "/cgi-bin/hgTracks") +time.sleep(3) +driver.find_element_by_id("positionInput").clear() +driver.find_element_by_id("positionInput").send_keys("scaffold_3:1,888,907-1,888,948") +driver.find_element_by_id("goButton").click() +driver.find_element_by_id("hgt.out1").click() +time.sleep(3) +# Tests track hub annotation if it is on the RR +if 'hub_129603_daph scaffold_3' in driver.page_source: + driver.find_element_by_xpath("//td[@id='td_data_hub_129603_myTrack']/div[2]/map/area").click() +else: + driver.find_element_by_xpath("//td[@id='td_data_hub_6872_myTrack']/div[2]/map/area").click() + + +# Tests Mega Hub US +cartReset() +driver.get(machine + "/cgi-bin/hgTracks?db=hg19&measureTiming=1&hubUrl=https://hgwdev.gi.ucsc.edu/~brianlee/hubTesting/manyMulitWigsENCODE/hub.txt") +driver.get(machine + "/cgi-bin/hgTracks") +driver.find_element_by_id("positionInput").clear() +driver.find_element_by_id("positionInput").send_keys("chr10:69,644,427-69,678,147") +driver.find_element_by_id("goButton").click() +driver.find_element_by_id("hgt.out1").click() +time.sleep(3) +# Tests track hub annotation if it is on the RR +if 'hub_336627' in driver.page_source: + driver.find_element_by_xpath("//td[@id='td_data_hub_336627_multiWig4']/div[2]/map/area").click() +else: + driver.find_element_by_xpath("//td[@id='td_data_hub_9717_multiWig4']/div[2]/map/area").click() + + +# Tests hgBlat All and Monk Seal/Human MYLK Protein +cartReset() +driver.get(machine + "/cgi-bin/hgGateway?db=hg19") +a = ActionChains(driver) +#identify element +m = driver.find_element_by_id("tools3") +#hover over element +a.move_to_element(m).perform() +#identify sub menu element +n = driver.find_element_by_id("blatMenuLink") +# hover over element and click +a.move_to_element(n).click().perform() +driver.find_element_by_id("searchAllText").click() +driver.find_element_by_name("userSeq").clear() +driver.find_element_by_name("userSeq").send_keys("MIPDTDLQVQLASRNRVGECSCQVSLMLQSSPGRAPLRGREPVSCEGLCS\\nQGAGAHGAGGDCYGTLRPGWPARGQGWPEEEDGEDVRGLLKRRVETRQHT\\nEEAIRQQEVEQLDFRDLLGKKVSTKTVSEEDLKEIPAEQMDFRANLQRQV\\nKPKTVSEEERKVHSPQQVDFRSVLAKKGTPKTPVPEKAPLPKPATPDFRS\\nVLGSKKKLPAENGSNNAEALNAKAAESPKAVSNAQPLGSLKPLGNAKPAE\\nTLRPVGNAKPAEPTKPVDNTKLAETLKPIGNAKPAETPKPMGNA") +driver.find_element_by_name("Submit").click() +driver.find_element_by_id("res0").click() +time.sleep(3) + +# Closes the current window on which Selenium is running +driver.close()