a7f53180b993efb1a7484c732f9b8693e666fc76 lrnassar Fri Jun 16 15:18:02 2023 -0700 Removing a word since it can confuse and adds no value to the example, refs #31241 diff --git src/hg/htdocs/goldenPath/help/chain.html src/hg/htdocs/goldenPath/help/chain.html index cf1b183..6d5e546 100755 --- src/hg/htdocs/goldenPath/help/chain.html +++ src/hg/htdocs/goldenPath/help/chain.html @@ -95,18 +95,18 @@ Rearrangement display is a representation of the path that the sequence follows in the "other" sequence. You start in the upper left and move to the right, following the lines if you come to the end of a block. If a block is red, which means it is a match on the negative strand, then you reverse your course and start going from right to left. The gray lines mean there are no bases in the other sequence between the blocks. Orange lines means there are some bases in there that are not aligning.
The display type can be enabled on the track configuration page of eligible tracks. Below are two examples for clarity.