2b50ebde25b8ad6c5a43797ae0ceb85ae66fd0bc
markd
  Sun Jun 11 13:58:19 2023 -0700
fixed a couple of calls to pslTransMap to add new alignments

diff --git src/hg/lib/hgHgvs.c src/hg/lib/hgHgvs.c
index 1a27a47..23a2428 100644
--- src/hg/lib/hgHgvs.c
+++ src/hg/lib/hgHgvs.c
@@ -1756,31 +1756,31 @@
         }
     }
 // Not contained in a deletion from reference genome (txAli target) -- return NULL.
 return NULL;
 }
 
 
 static struct psl *mapPsl(struct hgvsVariant *hgvs, char *acc, struct psl *txAli,
                           struct genbankCds *cds, int *retUpstream, int *retDownstream)
 /* Use pslTransMap to map hgvs onto the genome. */
 {
 // variantPsl contains the anchor if a non-cdsStart anchor is used because
 // the actual position might be outside the bounds of the transcript sequence (intron/UTR)
 struct psl *variantPsl = pslFromHgvsNuc(hgvs, acc, txAli->qSize, txAli->qEnd, cds,
                                         retUpstream, retDownstream);
-struct psl *mappedToGenome = pslTransMap(pslTransMapNoOpts, variantPsl, txAli);
+struct psl *mappedToGenome = pslTransMap(pslTransMapNoOpts, variantPsl, pslTypeUnspecified, txAli, pslTypeUnspecified);
 // If there is a deletion in the genome / insertion in the transcript then pslTransMap cannot
 // map those bases to the genome.  In that case take a harder look and return the deletion
 // coords.
 if (mappedToGenome == NULL)
     mappedToGenome = mapToDeletion(variantPsl, txAli);
 pslFree(&variantPsl);
 return mappedToGenome;
 }
 
 static char *pslTableForAcc(char *db, char *acc)
 /* Based on acc (and whether db has NCBI RefSeq alignments), pick a PSL (or genePred for GENCODE)
  * table where acc should be found (table may or may not exist).  Don't free the returned string. */
 {
 char *pslTable = NULL;
 if (startsWith("LRG_", acc))