0919ab12c7fff4d83613273cad9d7a13b1af668c markd Mon Jun 12 19:29:34 2023 -0700 allow pslMapPostChain handle protein/NA alignments diff --git src/utils/pslMapPostChain/tests/expected/blastProtRnaTest.psl src/utils/pslMapPostChain/tests/expected/blastProtRnaTest.psl index 6b24c21..e2707fa 100644 --- src/utils/pslMapPostChain/tests/expected/blastProtRnaTest.psl +++ src/utils/pslMapPostChain/tests/expected/blastProtRnaTest.psl @@ -1,4 +1,7 @@ 987 1 0 0 1 121 1 1136 ++ Q86UQ4-1 5058 0 1109 ENST00000417403.5 3528 26 3526 2 300,688, 0,421, 26,1462, 121 1 0 0 0 0 0 0 ++ Q86UQ4-1 5058 299 421 ENST00000417403.5 3528 999 1365 1 122, 299, 999, +351 694 0 0 12 379 26 3421 ++ Q8N139-1 1617 170 1594 ENST00000435803.6 17188 10583 15137 27 37,34,81,11,64,21,2,5,9,21,21,46,39,126,41,14,26,21,42,45,36,11,43,123,47,35,44, 170,210,244,325,337,401,422,424,429,440,477,501,549,588,714,755,769,798,819,1026,1071,1109,1300,1343,1467,1514,1550, 10583,10694,10808,11060,11093,11297,11366,11435,11459,11486,11549,11612,11750,11873,12272,12398,12443,12521,12596,13430,13568,13676,14228,14387,14756,14900,15005, +164 447 0 0 9 23 21 1332 ++ Q8N139-1 1617 165 799 ENST00000435803.6 17188 13196 15161 22 6,52,24,19,14,7,60,26,11,3,9,43,16,70,12,98,58,7,27,18,20,11, 165,171,223,247,267,281,288,348,374,391,396,406,453,473,544,556,654,712,722,750,768,788, 13196,13220,13400,13475,13532,13580,13607,13829,13919,13952,13961,13988,14117,14165,14375,14420,14717,14903,14924,15005,15062,15128, +155 345 0 0 5 19 17 1069 ++ Q8N139-1 1617 1073 1592 ENST00000435803.6 17188 10856 12509 18 22,11,11,51,11,27,41,17,23,47,37,70,5,44,15,7,19,42, 1073,1096,1107,1118,1169,1180,1207,1248,1268,1301,1348,1385,1458,1463,1509,1524,1531,1550, 10856,10922,10964,11033,11198,11234,11318,11474,11525,11594,11753,11870,12080,12098,12230,12299,12323,12383, 116 2 0 0 0 0 0 0 ++ Q9NTW7-1 645 295 413 ENST00000456175.5 445 1 355 1 118, 295, 1, 33 1 0 0 0 0 0 0 ++ Q9NTW7-1 645 474 508 ENST00000456175.5 445 341 443 1 34, 474, 341,