0919ab12c7fff4d83613273cad9d7a13b1af668c
markd
  Mon Jun 12 19:29:34 2023 -0700
allow pslMapPostChain handle protein/NA alignments

diff --git src/utils/pslMapPostChain/tests/input/blastProtRna.psl src/utils/pslMapPostChain/tests/input/blastProtRna.psl
index 523ab71..26a6854 100644
--- src/utils/pslMapPostChain/tests/input/blastProtRna.psl
+++ src/utils/pslMapPostChain/tests/input/blastProtRna.psl
@@ -1,5 +1,10 @@
 33	1	0	0	0	0	0	0	++	Q9NTW7-1	645	474	508	ENST00000456175.5	445	341	443	1	34,	474,	341,
 116	2	0	0	0	0	0	0	++	Q9NTW7-1	645	295	413	ENST00000456175.5	445	1	355	1	118,	295,	1,
 688	0	0	0	0	0	0	0	++	Q86UQ4-1	5058	421	1109	ENST00000417403.5	3528	1462	3526	1	688,	421,	1462,
 299	1	0	0	0	0	0	0	++	Q86UQ4-1	5058	0	300	ENST00000417403.5	3528	26	926	1	300,	0,	26,
 121	1	0	0	0	0	0	0	++	Q86UQ4-1	5058	299	421	ENST00000417403.5	3528	999	1365	1	122,	299,	999,
+217	444	0	0	7	30	18	1394	++	Q8N139-1	1617	170	861	ENST00000435803.6	17188	10583	12722	19	37,34,81,11,64,21,2,5,9,21,21,46,39,126,41,14,26,21,42,	170,210,244,325,337,401,422,424,429,440,477,501,549,588,714,755,769,798,819,	10583,10694,10808,11060,11093,11297,11366,11435,11459,11486,11549,11612,11750,11873,12272,12398,12443,12521,12596,
+109	183	0	0	2	2	4	529	++	Q8N139-1	1617	1300	1594	ENST00000435803.6	17188	14228	15137	5	43,123,47,35,44,	1300,1343,1467,1514,1550,	14228,14387,14756,14900,15005,
+155	345	0	0	5	19	17	1069	++	Q8N139-1	1617	1073	1592	ENST00000435803.6	17188	10856	12509	18	22,11,11,51,11,27,41,17,23,47,37,70,5,44,15,7,19,42,	1073,1096,1107,1118,1169,1180,1207,1248,1268,1301,1348,1385,1458,1463,1509,1524,1531,1550,	10856,10922,10964,11033,11198,11234,11318,11474,11525,11594,11753,11870,12080,12098,12230,12299,12323,12383,
+164	447	0	0	9	23	21	1332	++	Q8N139-1	1617	165	799	ENST00000435803.6	17188	13196	15161	22	6,52,24,19,14,7,60,26,11,3,9,43,16,70,12,98,58,7,27,18,20,11,	165,171,223,247,267,281,288,348,374,391,396,406,453,473,544,556,654,712,722,750,768,788,	13196,13220,13400,13475,13532,13580,13607,13829,13919,13952,13961,13988,14117,14165,14375,14420,14717,14903,14924,15005,15062,15128,
+25	67	0	0	1	2	2	165	++	Q8N139-1	1617	1026	1120	ENST00000435803.6	17188	13430	13709	3	45,36,11,	1026,1071,1109,	13430,13568,13676,