0919ab12c7fff4d83613273cad9d7a13b1af668c markd Mon Jun 12 19:29:34 2023 -0700 allow pslMapPostChain handle protein/NA alignments diff --git src/utils/pslMapPostChain/tests/input/blastProtRna.psl src/utils/pslMapPostChain/tests/input/blastProtRna.psl index 523ab71..26a6854 100644 --- src/utils/pslMapPostChain/tests/input/blastProtRna.psl +++ src/utils/pslMapPostChain/tests/input/blastProtRna.psl @@ -1,5 +1,10 @@ 33 1 0 0 0 0 0 0 ++ Q9NTW7-1 645 474 508 ENST00000456175.5 445 341 443 1 34, 474, 341, 116 2 0 0 0 0 0 0 ++ Q9NTW7-1 645 295 413 ENST00000456175.5 445 1 355 1 118, 295, 1, 688 0 0 0 0 0 0 0 ++ Q86UQ4-1 5058 421 1109 ENST00000417403.5 3528 1462 3526 1 688, 421, 1462, 299 1 0 0 0 0 0 0 ++ Q86UQ4-1 5058 0 300 ENST00000417403.5 3528 26 926 1 300, 0, 26, 121 1 0 0 0 0 0 0 ++ Q86UQ4-1 5058 299 421 ENST00000417403.5 3528 999 1365 1 122, 299, 999, +217 444 0 0 7 30 18 1394 ++ Q8N139-1 1617 170 861 ENST00000435803.6 17188 10583 12722 19 37,34,81,11,64,21,2,5,9,21,21,46,39,126,41,14,26,21,42, 170,210,244,325,337,401,422,424,429,440,477,501,549,588,714,755,769,798,819, 10583,10694,10808,11060,11093,11297,11366,11435,11459,11486,11549,11612,11750,11873,12272,12398,12443,12521,12596, +109 183 0 0 2 2 4 529 ++ Q8N139-1 1617 1300 1594 ENST00000435803.6 17188 14228 15137 5 43,123,47,35,44, 1300,1343,1467,1514,1550, 14228,14387,14756,14900,15005, +155 345 0 0 5 19 17 1069 ++ Q8N139-1 1617 1073 1592 ENST00000435803.6 17188 10856 12509 18 22,11,11,51,11,27,41,17,23,47,37,70,5,44,15,7,19,42, 1073,1096,1107,1118,1169,1180,1207,1248,1268,1301,1348,1385,1458,1463,1509,1524,1531,1550, 10856,10922,10964,11033,11198,11234,11318,11474,11525,11594,11753,11870,12080,12098,12230,12299,12323,12383, +164 447 0 0 9 23 21 1332 ++ Q8N139-1 1617 165 799 ENST00000435803.6 17188 13196 15161 22 6,52,24,19,14,7,60,26,11,3,9,43,16,70,12,98,58,7,27,18,20,11, 165,171,223,247,267,281,288,348,374,391,396,406,453,473,544,556,654,712,722,750,768,788, 13196,13220,13400,13475,13532,13580,13607,13829,13919,13952,13961,13988,14117,14165,14375,14420,14717,14903,14924,15005,15062,15128, +25 67 0 0 1 2 2 165 ++ Q8N139-1 1617 1026 1120 ENST00000435803.6 17188 13430 13709 3 45,36,11, 1026,1071,1109, 13430,13568,13676,