a97f8a0fffb31a2b3521e573a03f454fb60275d3 markd Tue May 30 21:30:12 2023 -0700 Add mechnaism to fix problem with mapping prot-prot via prot-na alignment by explictly specifying the type of alignments diff --git src/utils/pslMap/tests/expected/testSpGencode.mapinfo src/utils/pslMap/tests/expected/testSpGencode.mapinfo index c963182..a3c2251 100644 --- src/utils/pslMap/tests/expected/testSpGencode.mapinfo +++ src/utils/pslMap/tests/expected/testSpGencode.mapinfo @@ -1,2 +1,2 @@ #srcQName srcQStart srcQEnd srcQSize srcTName srcTStart srcTEnd srcStrand srcAligned mappingQName mappingQStart mappingQEnd mappingTName mappingTStart mappingTEnd mappingStrand mappingId mappedQName mappedQStart mappedQEnd mappedTName mappedTStart mappedTEnd mappedStrand mappedAligned qStartTrunc qEndTrunc mappedPslLine -Q9Y215-1#11541 0 175 175 Q9Y215-1 95 270 + 175 Q9Y215-1 0 455 ENST00000679838.1 95 1447 ++ 0 Q9Y215-1#11541 0 175 ENST00000679838.1 190 352 + 162 0 0 0 +Q9Y215-1#11541 0 175 175 Q9Y215-1 95 270 + 175 Q9Y215-1 0 455 ENST00000679838.1 95 1447 ++ 0 Q9Y215-1#11541 0 525 ENST00000679838.1 367 892 + 525 0 -350 0