0db22588a7ff9208f468cbb5a80884703868a26a braney Tue Jun 27 12:15:23 2023 -0700 change maxItems default from 250 to 10,000 diff --git src/hg/htdocs/goldenPath/help/customTrackText.html src/hg/htdocs/goldenPath/help/customTrackText.html index 1d364cf..b11cc52 100755 --- src/hg/htdocs/goldenPath/help/customTrackText.html +++ src/hg/htdocs/goldenPath/help/customTrackText.html @@ -615,31 +615,31 @@ priority=<priority> - When the group attribute is set, defines the display position of the track relative to other tracks within the same group in the Genome Browser window. If group is not set, the priority attribute defines the track's order relative to other custom tracks displayed in the default group, "user".
  • db=<UCSC_assembly_name> - When set, indicates the specific genome assembly for which the annotation data is intended; the custom track manager will display an error if a user attempts to load the track onto a different assembly. Any valid UCSC assembly ID may be used (eg. hg18, mm8, felCat1, etc.). The default setting is blank, allowing the custom track to be displayed on any assembly.
  • offset=<offset> - Defines a number to be added to all coordinates in the annotation track. The default is "0".
  • maxItems=<#> - Defines the maximum number of items the track can - contain. The default value is 250. Be aware that tracks with an extremely large number of items + contain. The default value is 10,000. Be aware that tracks with an extremely large number of items can cause system instability. The Kent source utility bedItemOverlapCount can assist in analyzing base overlap with large tracks.
  • url=<external_url> - Defines a URL for an external link associated with this track. This URL will be used in the details page for the track. Any "$$"in this string this will be substituted with the item name. There is no default for this attribute.
  • htmlUrl=<external_url> - Defines a URL for an HTML description page to be displayed with this track. There is no default for this attribute. A template for a standard format HTML track description is here.
  • bigDataUrl=<external_url> - Defines a URL to the data file for BAM,