0db22588a7ff9208f468cbb5a80884703868a26a braney Tue Jun 27 12:15:23 2023 -0700 change maxItems default from 250 to 10,000 diff --git src/hg/htdocs/goldenPath/help/customTrackText.html src/hg/htdocs/goldenPath/help/customTrackText.html index 1d364cf..b11cc52 100755 --- src/hg/htdocs/goldenPath/help/customTrackText.html +++ src/hg/htdocs/goldenPath/help/customTrackText.html @@ -615,31 +615,31 @@ <strong>priority=<<em>priority</em>></strong> - When the <em>group</em> attribute is set, defines the display position of the track relative to other tracks within the same group in the Genome Browser window. If <em>group</em> is not set, the <em>priority</em> attribute defines the track's order relative to other custom tracks displayed in the default group, "user".</li> <li> <strong>db=<<em>UCSC_assembly_name</em>></strong> - When set, indicates the specific genome assembly for which the annotation data is intended; the custom track manager will display an error if a user attempts to load the track onto a different assembly. Any valid UCSC assembly ID may be used (<em>eg.</em> hg18, mm8, felCat1, etc.). The default setting is blank, allowing the custom track to be displayed on any assembly.</li> <li> <strong>offset=<<em>offset</em>></strong> - Defines a number to be added to all coordinates in the annotation track. The default is "0".</li> <li> <strong>maxItems=<<em>#</em>></strong> - Defines the maximum number of items the track can - contain. The default value is 250. Be aware that tracks with an extremely large number of items + contain. The default value is 10,000. Be aware that tracks with an extremely large number of items can cause system instability. The <a href="http://genomewiki.ucsc.edu/index.php/Kent_source_utilities" target="_blank"> Kent source utility</a> bedItemOverlapCount can assist in analyzing base overlap with large tracks.</li> <li> <strong>url=<<em>external_url</em>></strong> - Defines a URL for an external link associated with this track. This URL will be used in the details page for the track. Any "$$"in this string this will be substituted with the item name. There is no default for this attribute.</li> <li> <strong>htmlUrl=<<em>external_url</em>></strong> - Defines a URL for an HTML description page to be displayed with this track. There is no default for this attribute. A template for a standard format HTML track description is <a class="change" target="_blank" href="http://genome.ucsc.edu/goldenPath/help/ct_description.txt">here</a>.</li> <li> <strong>bigDataUrl=<<em>external_url</em>></strong> - Defines a URL to the data file for <a href="../help/bam.html" target="_blank">BAM</a>,