ff0b1e7bb394bd39e8c550fafb2be3c51d19f7b0
gperez2
  Tue Jun 27 10:48:28 2023 -0700
Adding path for commands, make directory command and month for directory name, refs #29319

diff --git src/utils/qa/hubCheckPublicHubs.sh src/utils/qa/hubCheckPublicHubs.sh
index 85aff58..acea844 100755
--- src/utils/qa/hubCheckPublicHubs.sh
+++ src/utils/qa/hubCheckPublicHubs.sh
@@ -1,17 +1,18 @@
 #!/usr/bin/env bash
 
 # Program Header
 # Name:   Gerardo Perez
 # Description: A program that runs hubCheck for all the public hubs on the RR and outputs it into a file
 #
 # hubCheckPublicHubs.sh
 #
 
-echo '#############################################' >> /hive/users/qateam/hubCheckCronArchive/`date +'%Y'`/hubCheck_output
-for output in $(hgsql -h genome-centdb -Ne "select hubUrl from hubPublic" hgcentral | tail -n +2)
+mkdir -p /hive/users/qateam/hubCheckCronArchive/`date +'%Y-%m'`/
+echo '#############################################' >> /hive/users/qateam/hubCheckCronArchive/`date +'%Y-%m'`/hubCheck_output
+for output in $(/cluster/bin/x86_64/hgsql -h genome-centdb -Ne "select hubUrl from hubPublic" hgcentral | tail -n +2)
 do
-    echo $output >> /hive/users/qateam/hubCheckCronArchive/`date +'%Y'`/hubCheck_output
-    hubCheck $output >> /hive/users/qateam/hubCheckCronArchive/`date +'%Y'`/hubCheck_output
-    echo '#############################################' >> /hive/users/qateam/hubCheckCronArchive/`date +'%Y'`/hubCheck_output
+    echo $output >> /hive/users/qateam/hubCheckCronArchive/`date +'%Y-%m'`/hubCheck_output
+    /cluster/bin/x86_64/hubCheck $output >> /hive/users/qateam/hubCheckCronArchive/`date +'%Y-%m'`/hubCheck_output
+    echo '#############################################' >> /hive/users/qateam/hubCheckCronArchive/`date +'%Y-%m'`/hubCheck_output
 done