0b248354b16bae38d735588644d54244d966dd1a hiram Thu Jun 29 13:13:24 2023 -0700 adding population and subpopulation descriptions refs #31561 diff --git src/hg/makeDb/doc/hg38/hprc.metaData.tsv src/hg/makeDb/doc/hg38/hprc.metaData.tsv index 4a38a2a..81fb9bc 100644 --- src/hg/makeDb/doc/hg38/hprc.metaData.tsv +++ src/hg/makeDb/doc/hg38/hprc.metaData.tsv @@ -1,16 +1,20 @@ +# obtained from: https://github.com/human-pangenomics/HPP_Year1_Assemblies/blob/main/sample_metadata/hprc_year1_assemblies_v2_sample_metadata.txt +# and: https://github.com/human-pangenomics/HPP_Year1_Assemblies/blob/main/genbank_changes/y1_genbank_assembly_accession_ids.txt +# # Sample Cohort Sex FamilyID Subpopulation Superpopulation maternal paternal Superpopulation Notes +# HG002 HPRC_PLUS male 3140 PGP - GCA_018852615.1 GCA_018852605.1 Ashkenazim Jewish HG00438 HPRC female SH012 CHS EAS GCA_018471515.1 GCA_018472595.1 HG005 HPRC_PLUS male 3150 PGP - GCA_018506965.1 GCA_018506945.1 Chinese HG00621 HPRC male SH066 CHS EAS GCA_018472605.1 GCA_018472575.1 HG00673 HPRC male SH079 CHS EAS GCA_018472565.1 GCA_018472585.1 HG00733 HPRC_PLUS female PR05 PUR AMR GCA_018506975.1 GCA_018506955.1 HG00735 HPRC female PR06 PUR AMR GCA_018472765.1 GCA_018472715.1 HG00741 HPRC female PR09 PUR AMR GCA_018471095.1 GCA_018471105.1 HG01071 HPRC female PR17 PUR AMR GCA_018472685.1 GCA_018472725.1 HG01106 HPRC male PR25 PUR AMR GCA_018471345.1 GCA_018471075.1 HG01109 HPRC_PLUS male PR33 PUR AMR GCA_018504365.1 GCA_018504645.1 HG01123 HPRC female CLM02 CLM AMR GCA_018469665.1 GCA_018469695.1 HG01175 HPRC female PR36 PUR AMR GCA_018471085.1 GCA_018471065.1 HG01243 HPRC_PLUS male PR22 PUR AMR GCA_018504375.1 GCA_018504045.1 HG01258 HPRC male CLM16 CLM AMR GCA_018469405.1 GCA_018469675.1