58a5e41d3614c5b524255bf2eb9b91840e92cc31 markd Fri Jun 30 11:35:10 2023 -0700 export main sheet diff --git src/hg/makeDb/doc/hs1/t2t-supplied.txt src/hg/makeDb/doc/hs1/t2t-supplied.txt index 4d01661..1401a41 100644 --- src/hg/makeDb/doc/hs1/t2t-supplied.txt +++ src/hg/makeDb/doc/hs1/t2t-supplied.txt @@ -60,30 +60,31 @@ RNAseq_k100_AB.markersandlength_meryl-21mer-chm13v1.1.bigwig -> RNAseq_k100_dual_21mer.bw lngbdb rnaseq/*.bw ================================================================ cytoBandsMapped (2022-02-22 markd) ---------------------------------------------------------------- cytoBand tracks from T2T project mapped from GRCh38 Supplied by Nick Altemose <nickaltemose@gmail.com>, <altemose@stanford.edu> Delivered via Slack, but available from https://s3-us-west-2.amazonaws.com/human-pangenomics/T2T/CHM13/assemblies/annotation/chm13v2.0_cytobands_allchrs.bed This track was generated using liftOver using the T2T GRCh38/hg38 minimap2 liftover alignments and manually modifying them, as described in chm13v2.0_CytoBandMapping.xlsx +The main sheet is also in chm13v2.0_CytoBandMapping.main.tsv bedToBigBed -type=bed4+1 -as=${HOME}/kent/src/hg/lib/cytoBand.as chm13v2.0_cytobands_allchrs.bed../chromAlias/ucsc.sizes.txt cytoBandMapped.bb trackData/cytoBandMapped lngbdb cytoBandMapped/*.bb ================================================================ sedefSegDups (2022-02-24 markd) ---------------------------------------------------------------- Supplied by Mitchell Robert Vollger <mvollger@uw.edu> team-segdups/Assembly_analysis/SEDEF/T2T-CHM13v2.SDs.bed bedToBigBed -as=${kentDir}/src/hg/makeDb/doc/GCA_009914755.4_T2T-CHM13v2.0/schema/sedefSegDups.as -type=bed9+ T2T-CHM13v2.SDs.bed../chromAlias/ucsc.sizes.txt sedefSegDups.bb lngbdb sedefSegDups/*.bb