Commits for max

v451_preview to v451_preview2 (2023-07-03 to 2023-07-10) v451

ea7173bd838a0f4795a1222eb5b49c85defbc4cf Mon Jul 3 05:13:11 2023 -0700

• the proper fix for hgGeneGraph unicode problems, taking back some of the earlier changes, refs #31563
  • src/hg/hgGeneGraph/hgGeneGraph - lines changed 48, context: html, text, full: html, text
  • src/hg/pyLib/hgLib3.py - lines changed 20, context: html, text, full: html, text

060b6269772642e273bb5264d936cbffdc5915d0 Mon Jul 3 11:25:11 2023 -0700

• Merge branch 'max-gene-graph'

5b1c8caa82d1924be9c2ec82a3b5d27182ed52ab Tue Jul 4 06:03:58 2023 -0700

• sys.stdout.buffer is not actually needed here, trying to avoid using buffer and using the normal buffered stdout instead, refs #31563
  • src/hg/hgGeneGraph/hgGeneGraph - lines changed 6, context: html, text, full: html, text

4914f5562d357582e9af010f479c5208ea887454 Tue Jul 4 06:13:51 2023 -0700

• on hgwbeta, we got '_io.BufferedWriter' object has no attribute 'buffer' when accessing stdout.buffer, not on hgwdev, see #31591. No idea why this happens but just in case, using the old-school way to wrap stdout now, as a file-like object, refs #31563
  • src/hg/hgGeneGraph/hgGeneGraph - lines changed 1, context: html, text, full: html, text

fea9f3be2871b26692d7e27574077668b2fe338e Tue Jul 4 06:50:35 2023 -0700

• changing default track control table to 90% of screen width. This has the disadvantage that the window size affects the layout more, but allows us to show more tracks on the screen. todays screens are wider. It sounded like a majority at the group meeting favored the 90% + 8 columns approach. refs #31609
  • src/hg/hgTracks/hgTracks.c - lines changed 1, context: html, text, full: html, text
  • src/hg/htdocs/style/HGStyle.css - lines changed 4, context: html, text, full: html, text
  • src/hg/inc/hui.h - lines changed 4, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 1, context: html, text, full: html, text

ab9183fde1b3d79ee51a52c1f6a0b05455767597 Wed Jul 5 06:18:10 2023 -0700

• adding more details to refseq docs page, have come up in various ml tickets, refs #31077
  • src/hg/makeDb/trackDb/human/hg19/refSeqComposite.html - lines changed 21, context: html, text, full: html, text

15dec6458047446acf4f6c982042cbee2a6bb6d5 Thu Jul 6 04:47:10 2023 -0700

• fixing spurious warning message in apache logs, refs #31707
  • src/hg/cartReset/cartReset.c - lines changed 1, context: html, text, full: html, text

f5f4c748361b9244ad682ea3955fa34ae553917c Thu Jul 6 10:15:04 2023 -0700

• slow down ct trash disposal, refs #31504
  • src/hg/js/hgTracks.js - lines changed 3, context: html, text, full: html, text

e84ee6d76d371ced4a8d5d75c69af730358f95a6 Fri Jul 7 02:58:18 2023 -0700

• fixing seed in hgGeneGraph, refs #31712
  • src/hg/hgGeneGraph/hgGeneGraph - lines changed 1, context: html, text, full: html, text

d14478c21d156caceb881995f8603433f24a9a99 Fri Jul 7 05:37:47 2023 -0700

• removing stray debug lines that got committed, thanks to Galt for pointing this out, refs #31712
  • src/hg/hgGeneGraph/hgGeneGraph - lines changed 5, context: html, text, full: html, text

06f5aa43bac0a32b2996caa8e1c507b1aa702f86 Mon Jul 10 03:02:20 2023 -0700

• forcing word break in track list, refs #31724
  • src/hg/htdocs/style/HGStyle.css - lines changed 18, context: html, text, full: html, text