d71b59631d13caec4b995680d714dcaed1da04fe gperez2 Tue Aug 1 10:18:24 2023 -0700 Updating text and images for the Track Duplication feature documentation, refs #30365 diff --git src/hg/htdocs/goldenPath/help/hgTracksHelp.html src/hg/htdocs/goldenPath/help/hgTracksHelp.html index 186faa3..6932963 100755 --- src/hg/htdocs/goldenPath/help/hgTracksHelp.html +++ src/hg/htdocs/goldenPath/help/hgTracksHelp.html @@ -475,49 +475,49 @@ select the desired mode from the control's display menu, and then click the <em>refresh</em> button. Alternatively, you can change the display mode by using the Genome Browser's <a href="#RIGHT_CLICK_NAV">right-click navigation</a> feature, or can toggle between dense and full modes for a displayed track (or pack mode when available) by clicking on the optional center label for the track.</p> <a name="duplicate"></a> <h3>Duplicating a track</h3> <p> Tracks that are not inside of composite or supertracks can be duplicated to allow for independent track settings for a track. To duplicate a track, go to the track settings page for the track and there will be a link, "Duplicate track", next to the Display mode setting:</p> <p class="text-center"><img src="/images/duplicateDisplay.png"></p> <p> Clicking the link will take you to the new track -settings page for the duplicate track with the additional text, "copy #2". This number +settings page for the duplicate track with the additional text, "(duplicate #1)". This number will increment by one for each additional copy of the track. After creating the copy, a "Remove duplicate" link will also appear on the track settings page for when you wish to remove the duplicated track. As an example, duplicating the GENCODE track on hg38 allows users to -have two tracks, one in 'pack' mode and a second track in 'full' mode as a 'density graph'.</p> +have two tracks, one in 'squish' mode and a second track in 'full' mode as a 'density graph'.</p> <div class="row"> <div class="col-md-6"> - <p class="text-center"><img src="/images/duplicateTrackUi.png" width="550px"></p> + <p class="text-center"><img src="/images/duplicateTrackUi_GENCODEV43.png" width="550px"></p> </div> <div class="col-md-6"> - <p class="text-center"><img src="/images/removeDuplicateTrackUi.png" width="550px"></p> + <p class="text-center"><img src="/images/removeDuplicateTrackUi_GENCODEV43.png" width="550px"></p> </div> </div> <p> Each copy of the track will have it's own independent settings to allow for multiple display views without having to revert back to an alternate view for the dataset.</p> <p class="text-center"> -<img src="/images/duplicationHgTracks.png" width="800px"> +<img src="/images/duplicationHgTracks_GENCODEV43.png" width="800px"> </p> <h3>Changing the display mode for a group of tracks</h3> <p> Track display modes may be set individually or as a group on the Genome Browser Track Configuration page. To access the configuration page, click the <em>configure</em> button on the annotation tracks page or the <em>configure tracks and display</em> button on the Gateway page. Exercise caution when using the <em>show all</em> buttons on track groups or assemblies that contain a large number tracks; this may seriously impact the display performance of the Genome Browser or cause your Internet browser to time out.</p> <h3>Hiding the track display controls</h3> <p> The entire set of track display controls at the bottom of the annotation tracks page may be hidden