File Changes for angie

v451_base to v452_preview (2023-07-17 to 2023-07-24) v452

• src/hg/cgilib/annoFormatVep.c
  • lines changed 4, context: html, text, full: html, text
    f3d3d03be73576bd1011a6b34e604c9c6566751b Fri Jul 21 20:55:57 2023 -0700
    Move up NULL check of scoreStr before use (doh). refs MLQ #31782
• src/hg/lib/customFactory.c
  • lines changed 13, context: html, text, full: html, text
    a3230817faa86411b3dd846711efbad97752c270 Tue Jul 18 09:52:08 2023 -0700
    Improved error message for non-bigDataUrl type specified with bigDataUrl=... instead of inline contents. refs #17455
• src/hg/utils/otto/sarscov2phylo/branchSpecificMask.yml
  • lines changed 10, context: html, text, full: html, text
    ea200cd254fbe9b6d231ee610ed51ed8c0eef899 Fri Jul 14 10:56:09 2023 -0700
    Added comments about false mutations induced in XBD, XBP, XBR and XBS when placed in BA.5 and later in BA.2.75.
  • lines changed 5, context: html, text, full: html, text
    c1f41351d9731fd77bc1fcdbcd2f41a91ede93a0 Sun Jul 23 15:11:31 2023 -0700
    Mask noisy sites 21994, 21995, 21998 in XBB (starting 2023-07-21 build). Pick a new representative for XBB.1.5 since order of mutations was switched (now T17124C > T23018C).
• src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv
  • lines changed 10, context: html, text, full: html, text
    13dc9939f18ed86230d4e9005bd4ef596214c4e2 Fri Jul 14 08:57:09 2023 -0700
    New lineages.
  • lines changed 5, context: html, text, full: html, text
    1c8ebe4c5ceceaeeee66ea1e68c252d51fde9f09 Fri Jul 14 10:06:15 2023 -0700
    Changes to XBD, XBP, XBR, XBS: they were removed and replaced, moving them from BA.5 to BA.2.75 which caused differences in false mutations from branch-specific masking.
  • lines changed 52, context: html, text, full: html, text
    64f081cb594a5afadce471a0c48eb4de92c88141 Sun Jul 23 15:14:57 2023 -0700
    New lineages. Also mask C21998A in several XBB sublineages because 21998 is now masked in XBB in branchSpecificMask.yml.