2b46d276f54b4c05bd6ac77b3117eec0bfc81277
markd
  Tue Jul 18 11:01:19 2023 -0700
import of GENCODE V44 final release

diff --git src/hg/makeDb/doc/hg38/gencode.txt src/hg/makeDb/doc/hg38/gencode.txt
index c59fc5f..9efcfc6 100644
--- src/hg/makeDb/doc/hg38/gencode.txt
+++ src/hg/makeDb/doc/hg38/gencode.txt
@@ -1182,50 +1182,54 @@
     # Update 'Release Notes' (for final)
     # human/hg38/wgEncodeGencodeSuper.html
 
     # edit human/hg38/trackDb.gencode.ra to remove alpha
     jkmake DBS=hg38
 
     # check joiner 
     pushd /hive/data/genomes/hg38/bed/gencodeV43/hgcImport
     make  -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck
 
     # check tracks in browser sandbox
     # commit all
     jkmake DBS=hg38 alpha
 
 #########################################################################
-2023-04-25: import of UCSC GENCODE group processing of GENCODE V44 pre-release for hgc all gencode  (markd)
+2023-04-25: import of UCSC GENCODE group processing of GENCODE V44 pre-release for GENCODE Versions (markd)
 
    # edit hg/makeDb/outside/gencode/gencodeLoad.mk to set release and ensembl versions
     pre="Pre"
+    [same as below]
+
+2023-07-18: import of UCSC GENCODE group processing of GENCODE V44 pre-release for GENCODE Versions (markd)
+   # edit hg/makeDb/outside/gencode/gencodeLoad.mk to set release and ensembl versions
+    pre=""
 
     # download, build and load tables
     mkdir -p /hive/data/genomes/hg38/bed/gencodeV44/hgcImport${pre}
     pushd /hive/data/genomes/hg38/bed/gencodeV44/hgcImport${pre}
 
     (time nice make -O -j 32 -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk) >&build.1.out&
 
     # compare tables from previous release to see if number changed makes
     # sense.  Results are in gencode-cmp.tsv
 
     # generate trackDb and joiner blurb
     pushd ~/kent/src/hg/makeDb/trackDb
-    ../outside/gencode/bin/gencodeGenerateTrackDbs hg38 44 110 'May 2023'
+    ../outside/gencode/bin/gencodeGenerateTrackDbs hg38 44 110 'July 2023' 
 
     # edit all.joiner to add ~/tmp/gencodeV44.joiner
 
     # Update 'Release Notes' (for final, not pre)
     # human/hg38/wgEncodeGencodeSuper.html
 
-    # edit human/hg38/trackDb.gencode.ra to remove alpha
     jkmake DBS=hg38
 
     # check joiner 
     pushd /hive/data/genomes/hg38/bed/gencodeV44/hgcImport${pre}
     make  -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck
 
     # check tracks in browser sandbox
     # commit all
     jkmake DBS=hg38 alpha
 
 #########################################################################