2b46d276f54b4c05bd6ac77b3117eec0bfc81277 markd Tue Jul 18 11:01:19 2023 -0700 import of GENCODE V44 final release diff --git src/hg/makeDb/outside/gencode/gencodeLoad.mk src/hg/makeDb/outside/gencode/gencodeLoad.mk index 572b583..41e6730 100644 --- src/hg/makeDb/outside/gencode/gencodeLoad.mk +++ src/hg/makeDb/outside/gencode/gencodeLoad.mk @@ -20,35 +20,35 @@ host=$(shell hostname) ppid=$(shell echo $$PPID) tmpExt = ${host}.${ppid}.tmp SHELL = bash -e export SHELLOPTS=pipefail ## # programs, etc ## mach = $(shell uname -m) ## # Release info and files from Sanger. # BEGIN EDIT THESE EACH RELEASE ## -#preRelease = no -preRelease = yes -#db = hg38 +preRelease = no +#preRelease = yes +db = hg38 #db = hg19 -db = mm39 +#db = mm39 #db = mm10 ifeq (${db},mm10) grcRefAssembly = GRCm38 verBase = M25 prevVer = M24 backmapTargetVer = M25 ver = ${verBase}lift37 gencodeOrg = Gencode_mouse ftpReleaseSubdir = release_${verBase}/GRCm38_mapping annGffTypeName = chr_patch_hapl_scaff.annotation isBackmap = yes else ifeq (${db},mm39) grcRefAssembly = GRCm39 ver = M33 prevVer = M32