4fb78c6bbad5852d825f348e8ec13faaa6b46f5c markd Tue Jul 18 12:37:09 2023 -0700 allow UTR as a discontinouis feature diff --git src/inc/gff3.h src/inc/gff3.h index f7f0fa6..b3a1e80 100644 --- src/inc/gff3.h +++ src/inc/gff3.h @@ -219,30 +219,31 @@ extern char *gff3FeatPseudogene; extern char *gff3FeatMRna; extern char *gff3FeatNCRnaGene; extern char *gff3FeatNCRna; extern char *gff3FeatRRna; extern char *gff3FeatTRna; extern char *gff3FeatLncRna; extern char *gff3FeatPseudogenicTranscript; extern char *gff3FeatScRna; extern char *gff3FeatSnRna; extern char *gff3FeatSnoRna; extern char *gff3FeatUnconfirmedTranscript; extern char *gff3FeatExon; extern char *gff3FeatCDS; extern char *gff3FeatThreePrimeUTR; +extern char *gff3FeatUTR; extern char *gff3FeatFivePrimeUTR; extern char *gff3FeatStartCodon; extern char *gff3FeatStopCodon; extern char *gff3FeatTranscript; extern char *gff3FeatPrimaryTranscript; extern char *gff3FeatCGeneSegment; extern char *gff3FeatDGeneSegment; extern char *gff3FeatJGeneSegment; extern char *gff3FeatVGeneSegment; struct gff3File *gff3FileOpen(char *fileName, int maxErr, unsigned flags, FILE *errFh); /* Parse a GFF3 file into a gff3File object. If maxErr not zero, then * continue to parse until this number of error have been reached. A maxErr * less than zero does not stop reports all errors. Write errors to errFh,