File Changes for chmalee

v452_preview to v452_preview2 (2023-07-24 to 2023-07-31) v452

• src/hg/hgPcr/hgPcr.c
  • lines changed 2, context: html, text, full: html, text
    2de160a334786c2168e379c5f02838f4aed40a3b Thu Jul 27 12:20:35 2023 -0700
    Fix two separate hgPcr related bugs. One, the primers entered by the user do not have to match the genome/transcript fully, and so when looking up the primers for showing mismatches we need to ensure we find them by relying on the psl qName rather than the primer file that holds the users input. Second, when clicking through to hgc, ensure that we check that the tStart and tEnd of the psl match what was clicked on so the right amplicon sequence can be shown, in the case that two separate searches that hit the same transcript are visible, refs #31784
• src/hg/hgTracks/cds.c
  • lines changed 18, context: html, text, full: html, text
    2de160a334786c2168e379c5f02838f4aed40a3b Thu Jul 27 12:20:35 2023 -0700
    Fix two separate hgPcr related bugs. One, the primers entered by the user do not have to match the genome/transcript fully, and so when looking up the primers for showing mismatches we need to ensure we find them by relying on the psl qName rather than the primer file that holds the users input. Second, when clicking through to hgc, ensure that we check that the tStart and tEnd of the psl match what was clicked on so the right amplicon sequence can be shown, in the case that two separate searches that hit the same transcript are visible, refs #31784
• src/hg/hgc/hgc.c
  • lines changed 26, context: html, text, full: html, text
    2de160a334786c2168e379c5f02838f4aed40a3b Thu Jul 27 12:20:35 2023 -0700
    Fix two separate hgPcr related bugs. One, the primers entered by the user do not have to match the genome/transcript fully, and so when looking up the primers for showing mismatches we need to ensure we find them by relying on the psl qName rather than the primer file that holds the users input. Second, when clicking through to hgc, ensure that we check that the tStart and tEnd of the psl match what was clicked on so the right amplicon sequence can be shown, in the case that two separate searches that hit the same transcript are visible, refs #31784
• src/hg/js/hgSearch.js
  • lines changed 2, context: html, text, full: html, text
    59fe82a7fcfef11d15cecee88ff2e3b7d20d78d8 Wed Jul 26 09:02:26 2023 -0700
    Fix hgSearch overwriting highlights because I was using the wrong variable to add new highlights to cart, refs #31758
• src/hg/js/hgTracks.js
  • lines changed 1, context: html, text, full: html, text
    54bb8a90b15d19a7af840e612125d1656111762d Mon Jul 31 10:16:21 2023 -0700
    Make changes to blue bar state persist in the cart, refs #19739
• src/hg/js/tutorial.js
  • lines changed 7, context: html, text, full: html, text
    36c7bf6775818acf0f16d1875e89fe5e8450cc7d Thu Jul 27 12:46:44 2023 -0700
    Log when users start and end the tutorial, refs Jairo email