2a4d1aa7d6d2ce32e3eb17b099ac4a23dc0fcfcc gperez2 Sat Aug 26 14:36:35 2023 -0700 Updating hgPcr target Genes track test case and other updates for the selenium qa testing script, refs #30817 diff --git src/utils/qa/qaTestScript.py src/utils/qa/qaTestScript.py index 59857f3..ab47c5a 100755 --- src/utils/qa/qaTestScript.py +++ src/utils/qa/qaTestScript.py @@ -1,569 +1,571 @@ #!/usr/bin/env python3 # Program Header # Name: Gerardo Perez # Description: A program that runs Selenium in either headless mode or local mode (window popup) # to run test cases for a machine (hgwdev, hgwbeta, and the RR). # # qaTestScript.py # # # Development Environment: VIM - Vi IMproved version 7.4.629 # Version: Python 3.6.5 # # # To run local mode (window popup), you will need to install chromedriver locally. # Ex. /Users/gerardoperez/Downloads/chromedriver # You can download chromedriver from https://chromedriver.chromium.org/downloads # # IGNORE the following error notes: # For error # (The process started from chrome location # /hive/users/lrnassar/selenium/chrome/opt/google/chrome/google-chrome is no longer running, # so ChromeDriver is assuming that Chrome has crashed.) # import os # os.environ['TMPDIR'] = "/hive/users/lrnassar/selenium/chrom113/TMP" # ^IGNORE # Imports module from selenium.webdriver.chrome.options import Options from selenium.webdriver.common.by import By from selenium.webdriver.common.action_chains import ActionChains from selenium import webdriver from selenium.webdriver.common.keys import Keys from selenium.webdriver.support.ui import Select from selenium.webdriver.support.ui import WebDriverWait from selenium.webdriver.support import expected_conditions as EC from selenium.common.exceptions import NoSuchElementException from selenium.common.exceptions import NoAlertPresentException import unittest, time, re, sys, argparse import getpass import os user = getpass.getuser() #Make tmpdir for the cron try: os.makedirs("/hive/users/"+user+"/selenium/chrom113/cron/TMP", exist_ok=True) except OSError as e: print(f"Error creating directory: {e}") os.environ['TMPDIR'] = "/hive/users/"+user+"/selenium/chrom113/cron/TMP" def initialize_driver(headless): """Initiates which webdriver to run for headless mode or local mode""" options = Options() if headless: options.add_argument('--headless') options.add_argument('--no-sandbox') options.add_argument("--headless") options.add_argument('--disable-dev-shm-usage') options.add_argument("--start-maximized") options.add_argument("--window-size=1920,1080") options.binary_location = '/hive/users/lrnassar/selenium/chrom113/chromeInstall/opt/google/chrome/google-chrome' driver = webdriver.Chrome('/hive/users/lrnassar/selenium/chrom113/chromedriver', options = options) else: # Asks user for the WebDriver location webdriver_location = input("Enter the WebDriver location: ") driver = webdriver.Chrome(executable_path=webdriver_location) return driver # Creates the command-line argument parser parser = argparse.ArgumentParser(description='Selenium script with headless/local mode.') parser.add_argument('--headless', action='store_true', help='Activate headless mode') parser.add_argument('--machine', type=str, help='Specify the machine URL') # Parses the command-line arguments args = parser.parse_args() # Asks the user for the website URL if not provided as a command-line argument if not args.machine: args.machine = input("Enter the machine URL (Ex. https://hgwbeta.soe.ucsc.edu):") # Initializes the driver based on the chosen mode driver = initialize_driver(args.headless) # Loads the machine website machine= args.machine def cartReset(): """The function does a cart reset""" a = ActionChains(driver) #identify element m = driver.find_element_by_link_text("Genome Browser") #hover over element a.move_to_element(m).perform() #identify sub menu element n = driver.find_element_by_link_text("Reset All User Settings") # hover over element and click a.move_to_element(n).click().perform() driver.implicitly_wait(2) # Tests the Gateway page and home page driver.get(machine + "/cgi-bin/hgGateway") driver.get(machine + "/index.html") driver.find_element_by_link_text("Home").click() driver.find_element_by_link_text("Genomes").click() driver.get(machine + "/cgi-bin/hgGateway") driver.find_element_by_xpath("//div[@id='selectSpeciesSection']/div[2]/div[2]/div[2]/div").click() # Tests mm39 hgTracks driver.get(machine + "/cgi-bin/hgTracks?db=mm39") -#cartReset() +cartReset() # Tests hg38 hgGene driver.get(machine + "/cgi-bin/hgTracks?db=hg38") driver.find_element_by_xpath("//td[@id='td_data_knownGene']/div[2]/map/area[5]").click() # Tests hg19 hgGene driver.get(machine + "/cgi-bin/hgTracks?db=hg19") driver.find_element_by_xpath("//td[@id='td_data_knownGene']/div[2]/map/area[5]").click() # Tests mm10 hgGene driver.get(machine + "/cgi-bin/hgTracks?db=mm10") driver.find_element_by_xpath("//td[@id='td_data_knownGene']/div[2]/map/area[5]").click() # Tests multi-region for hg38 cartReset() driver.get(machine + "/cgi-bin/hgTracks?db=hg38") driver.find_element_by_id("positionInput").clear() driver.find_element_by_id("positionInput").send_keys("chr7 192500 727300") driver.find_element_by_id("goButton").click() driver.find_element_by_name("hgTracksConfigMultiRegionPage").click() driver.find_element_by_xpath("(//input[@id='virtModeType'])[4]").click() driver.find_element_by_id("multiRegionsBedInput").send_keys("chr7 192570 260772 NM_020223.4\nchr7 290169 291488 NM_001374838.1\nchr7 497257 519846 NM_033023.5\nchr7 549197 727281 NM_001164760.2") driver.find_element_by_name("topSubmit").click() driver.find_element_by_xpath("//td[@id='td_data_ncbiRefSeqCurated']/div[2]/map/area").click() driver.find_element_by_xpath("//td[@id='td_data_ncbiRefSeqCurated']/div[2]/map/area[2]").click() # Tests hgGeneGraph driver.get(machine + "/cgi-bin/hgGeneGraph") driver.find_element_by_name("gene").clear() driver.find_element_by_name("gene").send_keys("sirt1") driver.find_element_by_name("1").click() driver.find_element_by_id("dropdownMenu1").click() driver.find_element_by_link_text("GNF2 Expression").click() driver.find_element_by_id("edge7").click() driver.find_element_by_xpath("(.//*[normalize-space(text()) and normalize-space(.)='Gene interactions and pathways from curated databases and text-mining'])[1]/following::a[2]") cartReset() # Tests hgVai driver.get(machine + "/cgi-bin/hgVai?hgva_agreedToDisclaimer=1") driver.find_element_by_id("subDisclmAgrd").click() # Tests hgc/hgGene for hg38 driver.get(machine + "/cgi-bin/cartReset") driver.get(machine + "/cgi-bin/hgGateway?db=hg38") driver.get(machine + "/cgi-bin/hgGene?hgg_gene=ENST00000370314.9&hgg_chrom=chrX&hgg_start=152166233&hgg_end=152451315&hgg_type=knownGene&db=hg38") driver.find_element_by_link_text("Sequence and Links").click() driver.find_element_by_link_text("Genomic Sequence (chrX:152,166,234-152,451,315)").click() driver.find_element_by_name("submit").click() # Tests hub on canFam3 cartReset() driver.get(machine + "/cgi-bin/hgGateway?db=canFam3") driver.get(machine + "/cgi-bin/hgTracks?hubUrl=https://data.broadinstitute.org/vgb/dog/dog/hub.txt&genome=canFam3&position=lastDbPos") # Tests non-human/mouse (oviAri4) on Table Browser cartReset() driver.get(machine + "/cgi-bin/hgGateway?db=oviAri4") a = ActionChains(driver) # identify element m = driver.find_element_by_id("tools3") # hover over element a.move_to_element(m).perform() # identify sub menu element n = driver.find_element_by_id("tableBrowserMenuLink") # hover over element and click a.move_to_element(n).click().perform() driver.find_element_by_id("hgta_doSchema").click() driver.get(machine + "/cgi-bin/hgTables?db=oviAri4") driver.find_element_by_name("hgta_doSummaryStats").click() # Tests a session with custom tracks, multiRegion, and assembly hub cartReset() driver.get(machine + "/cgi-bin/hgTracks?hgS_doOtherUser=submit&hgS_otherUserName=brianlee&hgS_otherUserSessionName=Custom_Tracks_AssemblyHub_MultiRegion_TrackCollection_BigWigs") driver.find_element_by_xpath("//td[@id='td_data_ct_UserTrack_3545']/div[2]/map/area[4]").click() driver.find_element_by_link_text("chr1:33719895-33742564").click() # Tests a DNA search on hgTracks cartReset() driver.get(machine + "/cgi-bin/hgTracks?db=hg38&hideTracks=1") driver.get(machine + "/cgi-bin/hgTracks") driver.find_element_by_id("positionInput").clear() driver.find_element_by_id("positionInput").send_keys("GTATGTAGCCACGGAGCACCATTACCTGTCACCATTACCTGAATGGCTA") driver.find_element_by_name("goButton").click() driver.find_element_by_xpath("//a[contains(text(),'browser')]").click() # Tests custom tracks on hg19 driver.get(machine + "/cgi-bin/hgGateway?db=hg19") a = ActionChains(driver) #identify element m = driver.find_element_by_id("myData") ##hover over element a.move_to_element(m).perform() #identify sub menu element n = driver.find_element_by_id("customTracksMenuLink") # hover over element and click a.move_to_element(n).click().perform() driver.find_element_by_name("hgct_customText").clear() driver.find_element_by_name("hgct_customText").send_keys("https://hgwdev-gperez2.gi.ucsc.edu/~gperez2/testing/hgCustom_testing/examples.WITHOUT.FTPS.txt") driver.find_element_by_name("Submit").click() driver.find_element_by_name("submit").click() driver.find_element_by_id("p_btn_ct_hicExampleTWO_9382").click() driver.find_element_by_name("ct_hicExampleTWO_9382.color").click() # Tests small custom track to click into hgTrackUi cartReset() driver.get(machine + "/cgi-bin/hgGateway?db=hg19") a = ActionChains(driver) #identify element m = driver.find_element_by_id("myData") ##hover over element a.move_to_element(m).perform() #identify sub menu element n = driver.find_element_by_id("customTracksMenuLink") # hover over element and click a.move_to_element(n).click().perform() driver.find_element_by_name("hgct_customText").clear() driver.find_element_by_name("hgct_customText").send_keys("https://hgwdev.gi.ucsc.edu/~brianlee/examples/customTracks/newTypes.txt") driver.find_element_by_name("Submit").click() driver.find_element_by_name("submit").click() #if 'barChart Example One' in driver.page_source: # print("Add Custom Tracks") # click into hgTrackUi of customTrack driver.find_element_by_xpath("//td[@id='td_data_ct_barChartExampleOne_4976']/div[2]/map/area[29]").click() driver.find_element_by_xpath("//div[@id='firstSection']/table/tbody/tr/td/table/tbody/tr/td/table/tbody/tr[2]/td[2]/p[2]/a").click() driver.find_element_by_xpath("//a[contains(text(),'Data schema/format description and download')]") driver.get(machine + "/cgi-bin/hgTracks") driver.find_element_by_xpath("//td[@id='td_data_ct_interactExample_4634']/div[2]/map/area[5]").click() driver.find_element_by_xpath("//div[@id='firstSection']/table/tbody/tr/td/table/tbody/tr/td/table/tbody/tr[2]/td[2]/p[2]/a").click() driver.find_element_by_xpath("//a[contains(text(),'Data schema/format description and download')]") ## Tests chromAlias hg38 custom track cartReset() driver.get(machine + "/cgi-bin/hgGateway?db=hg38") a = ActionChains(driver) #identify element m = driver.find_element_by_id("myData") ##hover over element a.move_to_element(m).perform() #identify sub menu element n = driver.find_element_by_id("customTracksMenuLink") # hover over element and click a.move_to_element(n).click().perform() driver.find_element_by_name("hgct_customText").clear() driver.find_element_by_name("hgct_customText").send_keys("https://hgwdev-gperez2.gi.ucsc.edu/~gperez2/testing/selenium/chrmAliasTestHg38_track") driver.find_element_by_name("Submit").click() driver.find_element_by_name("submit").click() # click into hgTrackUi of customTrack driver.find_element_by_xpath("//td[@id='td_data_ct_chrmAliasTestHg38_4656']/div[2]/map/area").click() driver.find_element_by_xpath("//div[@id='firstSection']/table/tbody/tr/td/table/tbody/tr/td/table/tbody/tr[2]/td[2]/p/a").click() driver.find_element_by_xpath("//a[contains(text(),'Data schema/format description and download')]") # Tests mm10 ENCODE hub cartReset() driver.get(machine + "/cgi-bin/hgTracks?db=mm10&hideTracks=1") driver.get(machine + "/cgi-bin/hgGateway?db=mm10&hubUrl=https://www.encodeproject.org/experiments/ENCSR736GVO/@@hub/hub.txt") driver.get(machine + "/cgi-bin/hgHubConnect?#unlistedHubs") driver.find_element_by_link_text("Connected Hubs").click() driver.get(machine + "/cgi-bin/hgTracks") driver.find_element_by_name("hgt.positionInput").clear() driver.find_element_by_name("hgt.positionInput").send_keys("chr12:56,694,976-56,714,605") driver.find_element_by_name("goButton").click() driver.find_element_by_name("hgt.out1").click() # Tests Public Hub search driver.get(machine + "/cgi-bin/hgHubConnect?hubSearchTerms=wuhCor1") driver.get(machine + "/cgi-bin/hgHubConnect?hubSearchTerms=methpipe") driver.get(machine + "/cgi-bin/hgHubConnect?hubSearchTerms=GCF") # Tests AssemblyHub search cartReset() driver.get(machine + "/cgi-bin/hgGateway?hubUrl=https://genome-test.gi.ucsc.edu/gbdb/hubs/genbank/vertebrate_mammalian/hub.ncbi.txt&genome=GCA_000493695.1_BalAcu1.0&position=lastDbPos") driver.get(machine + "/cgi-bin/hgTracks") driver.find_element_by_name("hgt.positionInput").clear() driver.find_element_by_name("hgt.positionInput").send_keys("ATDI01079686") driver.find_element_by_name("goButton").click() time.sleep(3) driver.find_element_by_id("hgt.out1").click() time.sleep(3) # Tests track hub annotation for specific machine if 'hub_26485' in driver.page_source: driver.find_element_by_xpath("//td[@id='td_data_hub_26485_assembly']/div[2]/map/area[3]").click() elif 'hub_11450' in driver.page_source: driver.find_element_by_xpath("//td[@id='td_data_hub_11450_assembly']/div[2]/map/area[3]").click() else: driver.find_element_by_xpath("//td[@id='td_data_hub_4081003_assembly']/div[2]/map/area[3]").click() time.sleep(2) # Tests HGVS searches cartReset() driver.get(machine + "/cgi-bin/hgTracks?db=hg38") driver.find_element_by_name("hgt.positionInput").clear() driver.find_element_by_name("hgt.positionInput").send_keys("NM_000310.4(PPT1):c.271_287del17insTT") driver.find_element_by_id("goButton").click() time.sleep(2) driver.find_element_by_xpath("//td[@id='td_data_ncbiRefSeqCurated']/div[2]/map/area[12]").click() driver.get(machine + "/cgi-bin/hgTracks?db=hg38") driver.find_element_by_name("hgt.positionInput").clear() driver.find_element_by_name("hgt.positionInput").send_keys("NM_007262.5(PARK7):c.-24+75_-24+92dup") driver.find_element_by_id("goButton").click() time.sleep(2) driver.find_element_by_name("hgt.positionInput").clear() driver.find_element_by_name("hgt.positionInput").send_keys("NM_006172.4(NPPA):c.456_*1delAA") driver.find_element_by_id("goButton").click() time.sleep(2) driver.find_element_by_name("hgt.positionInput").clear() driver.find_element_by_name("hgt.positionInput").send_keys("MYH11:c.503-14_503-12del") driver.find_element_by_id("goButton").click() time.sleep(2) driver.find_element_by_name("hgt.positionInput").clear() driver.find_element_by_name("hgt.positionInput").send_keys("NM_198576.4(AGRN):c.1057C>T") driver.find_element_by_id("goButton").click() time.sleep(2) driver.find_element_by_name("hgt.positionInput").clear() driver.find_element_by_name("hgt.positionInput").send_keys("NM_198056.3:c.1654G>T") driver.find_element_by_id("goButton").click() time.sleep(2) driver.find_element_by_name("hgt.positionInput").clear() driver.find_element_by_name("hgt.positionInput").send_keys("NP_002993.1:p.Asp92Glu") driver.find_element_by_id("goButton").click() time.sleep(2) driver.find_element_by_name("hgt.positionInput").clear() driver.find_element_by_name("hgt.positionInput").send_keys("NP_002993.1:p.D92E") driver.find_element_by_id("goButton").click() time.sleep(2) driver.find_element_by_name("hgt.positionInput").clear() driver.find_element_by_name("hgt.positionInput").send_keys("BRCA1 Ala744Cys") driver.find_element_by_id("goButton").click() time.sleep(2) driver.find_element_by_xpath("//td[@id='td_data_ncbiRefSeqCurated']/div[2]/map/area[4]").click() driver.get(machine + "/cgi-bin/hgTracks?db=hg38") driver.find_element_by_name("hgt.positionInput").clear() time.sleep(3) driver.find_element_by_name("hgt.positionInput").send_keys("NM_000828.5:c.-2G>A") driver.find_element_by_id("goButton").click() time.sleep(3) # Tests hgBlat cartReset() driver.get(machine + "/cgi-bin/hgGateway?db=hg19") a = ActionChains(driver) #identify element m = driver.find_element_by_id("tools3") #hover over element a.move_to_element(m).perform() #identify sub menu element n = driver.find_element_by_id("blatMenuLink") # hover over element and click a.move_to_element(n).click().perform() driver.find_element_by_name("userSeq").clear() driver.find_element_by_name("userSeq").send_keys("AACAAAATCAAACTGTTTTTGTTGGACAATTCTCTGTTAAGCAGCTATAA\\nGCTGAATGACATTAACCGCAAAATGTAACCATAAAGGCCATAAACCCGAC\\nATTGTTAATTAATTAAATGCCTCATTAACTTTTTTAAAAACATGATTTAT\\nTCGATTCATAGAAAACTTAACCATCACTACTAAATGCACACACATGCGGT\\nTCCACATTGGCATCTTAGCCTAAGAACAGACAGGTTCAACTGTAACTGGC\\nCTTTCAGGTGGTCTATTACAGATCTGAAGACAGAGGGTGTTTCTAAACCT\\nCAAGAACCAGATTAACAGAAAACAAAGCTTGAGCAGCCTTTTTATTGCAT\\nGTGGTATCTTTTTAGCTAAGCAGAAGACAATGATAAAGAGGGGTTTTGGG\\nAAACCTCTCCCAAAGCTGTGCATTCATACCGTACCTTATCCTGTTAAGCA\\nAACTGTTCTTTTATTTTAAAGGGTTTACACTGCCACATCTGAATGGACTA") driver.find_element_by_name("Submit").click() time.sleep(3) driver.find_element_by_xpath("//div[@id='firstSection']/table/tbody/tr/td/table/tbody/tr/td/table/tbody/tr[2]/td[2]/div[2]/pre/a").click() driver.find_element_by_xpath("//td[@id='td_data_hgUserPsl']/div[2]/map/area").click() time.sleep(3) driver.find_element_by_xpath("//div[@id='firstSection']/table/tbody/tr/td/table/tbody/tr/td/table/tbody/tr[2]/td[2]/a").click() time.sleep(3) driver.get(machine + "/cgi-bin/hgGateway?db=hg38") # Tests hgBlat for alt patch sequence driver.get(machine + "/cgi-bin/hgGateway?db=hg38") a = ActionChains(driver) #identify element m = driver.find_element_by_id("tools3") #hover over element a.move_to_element(m).perform() #identify sub menu element n = driver.find_element_by_id("blatMenuLink") # hover over element and click a.move_to_element(n).click().perform() driver.find_element_by_name("userSeq").clear() driver.find_element_by_name("userSeq").send_keys("CACACTGTGGATGACATCCAGCAGATCGCTGCTGCGCTGGCCCAGTGCATGGTAGGATGGCCCCACATGCTCTCCCCGCCCCGCATGCCTGCCAGGGTACTGGGTTCAGCCCCCCAGGGCAGACGGGCAGCTTGGCCGAGGAGCTGAGCCTCCAGCCTGGGC") driver.find_element_by_name("Submit").click() time.sleep(3) driver.find_element_by_xpath("//div[@id='firstSection']/table/tbody/tr/td/table/tbody/tr/td/table/tbody/tr[2]/td[2]/div[2]/pre/a").click() time.sleep(3) driver.find_element_by_xpath("//td[@id='td_data_altSeqLiftOverPsl']/div[2]/map/area[8]").click() time.sleep(3) driver.find_element_by_link_text("Show chr16_KI270853v1_alt placed on its chromosome").click() time.sleep(3) # Tests hgBlat for fix patch sequence cartReset() driver.get(machine + "/cgi-bin/hgGateway?db=hg38") a = ActionChains(driver) #identify element m = driver.find_element_by_id("tools3") #hover over element a.move_to_element(m).perform() #identify sub menu element n = driver.find_element_by_id("blatMenuLink") # hover over element and click a.move_to_element(n).click().perform() driver.find_element_by_name("userSeq").clear() driver.find_element_by_name("userSeq").send_keys("GTTTTTTCTCCTATGGCATGCAGGCGACATGTTACTTCCTATTCCCATAAACCCTCCACTGTAGGATTAACACCTAAGACACCAACCAAGACAAAAAAGATATGACCCTTGGT") driver.find_element_by_name("Submit").click() time.sleep(3) driver.find_element_by_xpath("//div[@id='firstSection']/table/tbody/tr/td/table/tbody/tr/td/table/tbody/tr[2]/td[2]/div[2]/pre/a").click() time.sleep(3) driver.find_element_by_xpath("//td[@id='td_data_fixSeqLiftOverPsl']/div[2]/map/area[4]").click() driver.find_element_by_link_text("Show chr1_MU273333v1_fix placed on its chromosome").click() time.sleep(3) # Tests hgPcr for hg38 driver.get(machine + "/cgi-bin/hgGateway?db=hg38") a = ActionChains(driver) #identify element m = driver.find_element_by_id("tools3") #hover over element a.move_to_element(m).perform() #identify sub menu element n = driver.find_element_by_id("ispMenuLink") # hover over element and click a.move_to_element(n).click().perform() driver.find_element_by_name("wp_f").clear() driver.find_element_by_name("wp_f").send_keys("AACAAAATCAAACTGTTTTTGTTGGACAATTCTCTGTTAAGCAGCTATAA") driver.find_element_by_name("wp_r").clear() driver.find_element_by_name("wp_r").send_keys("AACTGTTCTTTTATTTTAAAGGGTTTACACTGCCACATCTGAATGGACTA") driver.find_element_by_name("wp_flipReverse").click() driver.find_element_by_name("Submit").click() time.sleep(3) driver.find_element_by_link_text("chrX:40059679+40060178").click() time.sleep(3) # Tests hgConvert driver.get(machine + "/cgi-bin/hgTracks") a = ActionChains(driver) #identify element m = driver.find_element_by_id("view") #hover over element a.move_to_element(m).perform() #identify sub menu element n = driver.find_element_by_id("convertMenuLink") # hover over element and click a.move_to_element(n).click().perform() driver.find_element_by_name("hglft_doConvert").click() driver.find_element_by_link_text("chrX:39460925-39461424").click() driver.find_element_by_css_selector("#tools3 > span").click() # Tests hgLiftOver for mm39 cartReset() driver.get(machine + "/cgi-bin/hgTracks?db=mm39") a = ActionChains(driver) #identify element m = driver.find_element_by_id("tools3") #hover over element a.move_to_element(m).perform() #identify sub menu element n = driver.find_element_by_id("liftOverMenuLink") # hover over element and click a.move_to_element(n).click().perform() driver.find_element_by_name("hglft_userData").clear() driver.find_element_by_name("hglft_userData").send_keys("chr11:101,379,590-101,442,705") driver.find_element_by_name("Submit").click() time.sleep(3) driver.find_element_by_link_text("View Conversions") # Tests hgPcr target Genes Track (data changes with data pushes) cartReset() driver.get(machine + "/cgi-bin/hgTracks?db=hg38&hideTracks=1") driver.get(machine + "/cgi-bin/hgGateway?db=hg38&wp_target=hg38KgSeqV41") #will be hg38KgSeqV41 a = ActionChains(driver) #identify element m = driver.find_element_by_id("tools3") #hover over element a.move_to_element(m).perform() #identify sub menu element n = driver.find_element_by_id("ispMenuLink") # hover over element and click a.move_to_element(n).click().perform() driver.find_element_by_name("wp_f").clear() driver.find_element_by_name("wp_f").clear() driver.find_element_by_name("wp_f").send_keys("TTTTCCTAATAATGCTTGTCTTGGTCTTGTT") driver.find_element_by_name("wp_r").clear() driver.find_element_by_name("wp_r").send_keys("ACACACACAGAAAGACACACACAGACACAAAA") driver.find_element_by_name("wp_flipReverse").click() driver.find_element_by_name("wp_append").click() driver.find_element_by_name("wp_size").clear() driver.find_element_by_name("wp_size").send_keys("40000") select = Select(driver.find_element_by_name("wp_target")) select.select_by_visible_text("GENCODE Genes") driver.find_element_by_name("Submit").click() -driver.find_element_by_link_text("ENST00000644422.2__ABO:77+1295").click() +driver.find_element_by_link_text("ENST00000611156.4__ABO:90+1305").click() time.sleep(3) driver.find_element_by_xpath("//td[@id='td_data_hgPcrResult']/div[2]/map/area[2]").click() +cartReset() # Tests GenArk Rabbit Hub -cartReset() +#cartReset() driver.get(machine + "/cgi-bin/hgTracks?hubUrl=https://hgdownload.soe.ucsc.edu/hubs/GCF/000/003/625/GCF_000003625.3/hub.txt&genome=GCF_000003625.3") driver.get(machine + "/cgi-bin/hgTracks?hideTracks=1") driver.find_element_by_id("positionInput").clear() driver.find_element_by_id("positionInput").send_keys("HOPX") driver.find_element_by_id("goButton").click() time.sleep(3) driver.find_element_by_link_text("HOPX").click() # Tests Assembly Hubs at GitHub cartReset() driver.get(machine + "/cgi-bin/hgTracks?genome=daph&hubUrl=https://raw.githubusercontent.com/ucsc-browser/assemblyHubEx/master/Daphnia/hubExamples/hubAssembly/daph/hub.txt&position=scaffold_1%3A35591-35626") driver.get(machine + "/cgi-bin/hgTracks") time.sleep(3) driver.find_element_by_id("positionInput").clear() driver.find_element_by_id("positionInput").send_keys("scaffold_3:1,888,907-1,888,948") driver.find_element_by_id("goButton").click() +time.sleep(3) driver.find_element_by_id("hgt.out1").click() time.sleep(3) # Tests track hub annotation if it is on the RR if 'hub_129603_daph scaffold_3' in driver.page_source: driver.find_element_by_xpath("//td[@id='td_data_hub_129603_myTrack']/div[2]/map/area").click() else: driver.find_element_by_xpath("//td[@id='td_data_hub_6872_myTrack']/div[2]/map/area").click() # Tests Mega Hub US cartReset() driver.get(machine + "/cgi-bin/hgTracks?db=hg19&measureTiming=1&hubUrl=https://hgwdev.gi.ucsc.edu/~brianlee/hubTesting/manyMulitWigsENCODE/hub.txt") driver.get(machine + "/cgi-bin/hgTracks") driver.find_element_by_id("positionInput").clear() driver.find_element_by_id("positionInput").send_keys("chr10:69,644,427-69,678,147") driver.find_element_by_id("goButton").click() driver.find_element_by_id("hgt.out1").click() time.sleep(3) # Tests track hub annotation if it is on the RR if 'hub_336627' in driver.page_source: driver.find_element_by_xpath("//td[@id='td_data_hub_336627_multiWig4']/div[2]/map/area").click() else: driver.find_element_by_xpath("//td[@id='td_data_hub_9717_multiWig4']/div[2]/map/area").click() # Tests hgBlat All and Monk Seal/Human MYLK Protein cartReset() driver.get(machine + "/cgi-bin/hgGateway?db=hg19") a = ActionChains(driver) #identify element m = driver.find_element_by_id("tools3") #hover over element a.move_to_element(m).perform() #identify sub menu element n = driver.find_element_by_id("blatMenuLink") # hover over element and click a.move_to_element(n).click().perform() driver.find_element_by_id("searchAllText").click() driver.find_element_by_name("userSeq").clear() driver.find_element_by_name("userSeq").send_keys("MIPDTDLQVQLASRNRVGECSCQVSLMLQSSPGRAPLRGREPVSCEGLCS\\nQGAGAHGAGGDCYGTLRPGWPARGQGWPEEEDGEDVRGLLKRRVETRQHT\\nEEAIRQQEVEQLDFRDLLGKKVSTKTVSEEDLKEIPAEQMDFRANLQRQV\\nKPKTVSEEERKVHSPQQVDFRSVLAKKGTPKTPVPEKAPLPKPATPDFRS\\nVLGSKKKLPAENGSNNAEALNAKAAESPKAVSNAQPLGSLKPLGNAKPAE\\nTLRPVGNAKPAEPTKPVDNTKLAETLKPIGNAKPAETPKPMGNA") driver.find_element_by_name("Submit").click() driver.find_element_by_id("res0").click() time.sleep(3) # Closes the current window on which Selenium is running driver.close()