478769000cef7d4756c3cdc13c0d61d698f08a2b
hiram
  Thu Aug 24 19:39:05 2023 -0700
adding chainNet definitions for GCA_018873775.2_hg01243.v3.0 refs #31844

diff --git src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra
index 4833f44..de85eb4 100644
--- src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra
+++ src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra
@@ -986,15 +986,113 @@
         speciesOrder GCF_004115215.2
         speciesLabels GCF_004115215.2="platypus"
 
         track rbestNetGCF_004115215.2
         parent mafNetGCF_004115215.2Viewnet
         subGroups view=net
         shortLabel platypus rBestNet
         longLabel platypus (Nov. 2020 GCF_004115215.2_mOrnAna1.pri.v4) Reciprocal Best Net Alignment
         type bigMaf
         bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCF_004115215.2.rbestNet.bb
         summary /gbdb/$D/bbi/chainNet/$D.GCF_004115215.2.rbestNet.summary.bb
         speciesOrder GCF_004115215.2
         speciesLabels GCF_004115215.2="platypus"
 
 ##############################################################################
+
+##############################################################################
+# GCA_018873775.2 - human - Homo sapiens - taxId: 9606 - primates
+##############################################################################
+track chainNetGCA_018873775.2
+compositeTrack on
+shortLabel HG01243.v3.0 Chain/Net
+longLabel human (Sep. 2021 GCA_018873775.2_hg01243.v3.0), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+group compGeno
+noInherit on
+priority 100.1
+color 0,0,0
+altColor 100,50,0
+type bed 3
+sortOrder view=+
+matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
+chainMinScore 5000
+chainLinearGap medium
+matrixHeader A, C, G, T
+otherDb GCA_018873775.2
+html chainNet
+
+    track chainNetGCA_018873775.2Viewchain
+    shortLabel Chain
+    view chain
+    visibility pack
+    parent chainNetGCA_018873775.2
+    spectrum on
+
+        track chainGCA_018873775.2
+        parent chainNetGCA_018873775.2Viewchain
+        subGroups view=chain
+        shortLabel human Chain
+        longLabel human (Sep. 2021 GCA_018873775.2_hg01243.v3.0) Chained Alignments
+        type bigChain GCA_018873775.2
+        bigDataUrl /gbdb/$D/chainNet/$D.chainGCA_018873775.2.bb
+        linkDataUrl /gbdb/$D/chainNet/$D.chainGCA_018873775.2Link.bb
+
+        track chainSynGCA_018873775.2
+        parent chainNetGCA_018873775.2Viewchain
+        subGroups view=chain
+        shortLabel human synChain
+        longLabel human (Sep. 2021 GCA_018873775.2_hg01243.v3.0) Syntenic Chained Alignments
+        type bigChain GCA_018873775.2
+        bigDataUrl /gbdb/$D/chainNet/$D.chainSynGCA_018873775.2.bb
+        linkDataUrl /gbdb/$D/chainNet/$D.chainSynGCA_018873775.2Link.bb
+
+        track chainRBestGCA_018873775.2
+        parent chainNetGCA_018873775.2Viewchain
+        subGroups view=chain
+        shortLabel human rBestChain
+        longLabel human (Sep. 2021 GCA_018873775.2_hg01243.v3.0) Reciprocal Best Chained Alignments
+        type bigChain GCA_018873775.2
+        bigDataUrl /gbdb/$D/chainNet/$D.chainRBestGCA_018873775.2.bb
+        linkDataUrl /gbdb/$D/chainNet/$D.chainRBestGCA_018873775.2Link.bb
+
+    track mafNetGCA_018873775.2Viewnet
+    shortLabel Net
+    view net
+    visibility full
+    parent chainNetGCA_018873775.2
+
+        track netGCA_018873775.2
+        parent mafNetGCA_018873775.2Viewnet
+        subGroups view=net
+        shortLabel human mafNet
+        longLabel human (Sep. 2021 GCA_018873775.2_hg01243.v3.0) mafNet Alignment
+        type bigMaf
+        bigDataUrl /gbdb/$D/chainNet/$D.GCA_018873775.2.net.bb
+        summary /gbdb/$D/chainNet/$D.GCA_018873775.2.net.summary.bb
+        speciesOrder GCA_018873775.2
+        speciesLabels GCA_018873775.2="human"
+
+        track synNetGCA_018873775.2
+        parent mafNetGCA_018873775.2Viewnet
+        subGroups view=net
+        shortLabel human synNet
+        longLabel human (Sep. 2021 GCA_018873775.2_hg01243.v3.0) Syntenic Net Alignment
+        type bigMaf
+        bigDataUrl /gbdb/$D/chainNet/$D.GCA_018873775.2.synNet.bb
+        summary /gbdb/$D/chainNet/$D.GCA_018873775.2.synNet.summary.bb
+        speciesOrder GCA_018873775.2
+        speciesLabels GCA_018873775.2="human"
+
+        track rbestNetGCA_018873775.2
+        parent mafNetGCA_018873775.2Viewnet
+        subGroups view=net
+        shortLabel human rBestNet
+        longLabel human (Sep. 2021 GCA_018873775.2_hg01243.v3.0) Reciprocal Best Net Alignment
+        type bigMaf
+        bigDataUrl /gbdb/$D/chainNet/$D.GCA_018873775.2.rbestNet.bb
+        summary /gbdb/$D/chainNet/$D.GCA_018873775.2.rbestNet.summary.bb
+        speciesOrder GCA_018873775.2
+        speciesLabels GCA_018873775.2="human"
+