25a09db69fab1cdea5d0e52746627048d23d2aa7 hiram Thu Aug 24 20:21:57 2023 -0700 add chain definition for GCA_018873775.2_hg01243.v3.0 to the primate composite refs #31844 diff --git src/hg/makeDb/trackDb/human/chainNetPrimate.ra src/hg/makeDb/trackDb/human/chainNetPrimate.ra index 2890652..a51da2d 100644 --- src/hg/makeDb/trackDb/human/chainNetPrimate.ra +++ src/hg/makeDb/trackDb/human/chainNetPrimate.ra @@ -1,899 +1,908 @@ track primateChainNet compositeTrack on shortLabel Primate Chain/Net longLabel Primate Genomes, Chain and Net Alignments subGroup1 view Views chain=Chains net=Nets -subGroup2 species Species s000a=Human s000b=Hg38P2 s001=Human s002=J._Craig_Venter s0025=Chimp s003=Chimp s004=Chimp s005=Chimp s006=Chimp s007a=Bonobo s007b=Bonobo s008=Bonobo s009a=Gorilla s009b=Gorilla s010=Gorilla s011=Gorilla s012=Gorilla s013a=Orangutan s013b=Orangutan s014=Gibbon s015=Gibbon s016=Proboscis_monkey s017=Black_snub-nosed_monkey s018=Golden_snub-nosed_monkey s019=Angolan_colobus s020=Crab-eating_macaque s021=Rhesus s022=Rhesus s023a=Rhesus s023b=Rhesus s024=Baboon s025=Baboon s026=Baboon s027=Pig-tailed_macaque s028=Sooty_mangabey s029=Green_monkey s030=Green_monkey s031=Drill s032=Squirrel_monkey s033=Ma's_night_monkey s034a=Marmoset s034b=Marmoset s035=Marmoset s036=White-faced_sapajou s037=Tarsier s038=Tarsier s039=Sclater's_lemur s040=Black_lemur s041=Coquerel's_sifaka s042=Mouse_lemur s043=Mouse_lemur s044=Mouse_lemur s045=Bushbaby s046=Bushbaby +subGroup2 species Species s000a=Human s000b=Hg38P2 s001=Human s002=J._Craig_Venter s002a=HG01243v3 s0025=Chimp s003=Chimp s004=Chimp s005=Chimp s006=Chimp s007a=Bonobo s007b=Bonobo s008=Bonobo s009a=Gorilla s009b=Gorilla s010=Gorilla s011=Gorilla s012=Gorilla s013a=Orangutan s013b=Orangutan s014=Gibbon s015=Gibbon s016=Proboscis_monkey s017=Black_snub-nosed_monkey s018=Golden_snub-nosed_monkey s019=Angolan_colobus s020=Crab-eating_macaque s021=Rhesus s022=Rhesus s023a=Rhesus s023b=Rhesus s024=Baboon s025=Baboon s026=Baboon s027=Pig-tailed_macaque s028=Sooty_mangabey s029=Green_monkey s030=Green_monkey s031=Drill s032=Squirrel_monkey s033=Ma's_night_monkey s034a=Marmoset s034b=Marmoset s035=Marmoset s036=White-faced_sapajou s037=Tarsier s038=Tarsier s039=Sclater's_lemur s040=Black_lemur s041=Coquerel's_sifaka s042=Mouse_lemur s043=Mouse_lemur s044=Mouse_lemur s045=Bushbaby s046=Bushbaby subGroup3 clade Clade c00=hominidae c01=cercopithecinae c02=haplorrhini c03=strepsirrhini dragAndDrop subTracks visibility hide group compGeno noInherit on color 0,0,0 altColor 255,255,0 type bed 3 chainLinearGap loose chainMinScore 5000 dimensions dimensionX=clade dimensionY=species sortOrder species=+ view=+ clade=+ configurable on html primateChainNet priority 7 track primateChainNetViewchain shortLabel Chains view chain visibility pack subTrack primateChainNet spectrum on track chainHg38 subTrack primateChainNetViewchain off subGroups view=chain species=s000a clade=c00 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain hg38 otherDb hg38 track chainHg38Patch2 subTrack primateChainNetViewchain off subGroups view=chain species=s000b clade=c00 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain hg38Patch2 otherDb hg38Patch2 track chainHg18 subTrack primateChainNetViewchain off subGroups view=chain species=s001 clade=c00 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain hg18 otherDb hg18 track chainVenter1 subTrack primateChainNetViewchain off subGroups view=chain species=s002 clade=c00 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain venter1 otherDb venter1 + track chainGCA_018873775.2 + subTrack primateChainNetViewchain off + subGroups view=chain species=s002a clade=c00 + shortLabel HG01243/human Chain + longLabel human (Sep. 2021 GCA_018873775.2_hg01243.v3.0) Chained Alignments + type bigChain GCA_018873775.2 + bigDataUrl /gbdb/$D/chainNet/$D.chainGCA_018873775.2.bb + linkDataUrl /gbdb/$D/chainNet/$D.chainGCA_018873775.2Link.bb + track chainPanTro6 subTrack primateChainNetViewchain off subGroups view=chain species=s0025 clade=c00 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain panTro6 otherDb panTro6 track chainPanTro5 subTrack primateChainNetViewchain off subGroups view=chain species=s003 clade=c00 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain panTro5 otherDb panTro5 track chainPanTro4 subTrack primateChainNetViewchain off subGroups view=chain species=s004 clade=c00 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain panTro4 otherDb panTro4 track chainPanTro3 subTrack primateChainNetViewchain off subGroups view=chain species=s005 clade=c00 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain panTro3 otherDb panTro3 track chainPanTro2 subTrack primateChainNetViewchain off subGroups view=chain species=s006 clade=c00 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain panTro2 otherDb panTro2 track chainPanPan3 subTrack primateChainNetViewchain off subGroups view=chain species=s007b clade=c00 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain panPan3 otherDb panPan3 track chainPanPan2 subTrack primateChainNetViewchain off subGroups view=chain species=s007b clade=c00 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain panPan2 otherDb panPan2 track chainPanPan1 subTrack primateChainNetViewchain off subGroups view=chain species=s008 clade=c00 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain panPan1 otherDb panPan1 track chainGorGor6 subTrack primateChainNetViewchain off subGroups view=chain species=s009a clade=c00 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain gorGor6 otherDb gorGor6 track chainGorGor5 subTrack primateChainNetViewchain off subGroups view=chain species=s009b clade=c00 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain gorGor5 otherDb gorGor5 track chainGorGor4 subTrack primateChainNetViewchain off subGroups view=chain species=s010 clade=c00 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain gorGor4 otherDb gorGor4 track chainGorGor3 subTrack primateChainNetViewchain off subGroups view=chain species=s011 clade=c00 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain gorGor3 otherDb gorGor3 track chainPonAbe3 subTrack primateChainNetViewchain off subGroups view=chain species=s013a clade=c00 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain ponAbe3 otherDb ponAbe3 track chainPonAbe2 subTrack primateChainNetViewchain off subGroups view=chain species=s013b clade=c00 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain ponAbe2 otherDb ponAbe2 track chainNomLeu3 subTrack primateChainNetViewchain off subGroups view=chain species=s014 clade=c00 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain nomLeu3 otherDb nomLeu3 track chainNomLeu1 subTrack primateChainNetViewchain off subGroups view=chain species=s015 clade=c00 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain nomLeu1 otherDb nomLeu1 track chainNasLar1 subTrack primateChainNetViewchain off subGroups view=chain species=s016 clade=c01 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain nasLar1 otherDb nasLar1 track chainRhiBie1 subTrack primateChainNetViewchain off subGroups view=chain species=s017 clade=c01 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain rhiBie1 otherDb rhiBie1 track chainRhiRox1 subTrack primateChainNetViewchain off subGroups view=chain species=s018 clade=c01 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain rhiRox1 otherDb rhiRox1 track chainColAng1 subTrack primateChainNetViewchain off subGroups view=chain species=s019 clade=c01 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain colAng1 otherDb colAng1 track chainMacFas5 subTrack primateChainNetViewchain off subGroups view=chain species=s020 clade=c01 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain macFas5 otherDb macFas5 track chainRheMac10 subTrack primateChainNetViewchain off subGroups view=chain species=s021 clade=c01 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain rheMac10 otherDb rheMac10 track chainRheMac8 subTrack primateChainNetViewchain off subGroups view=chain species=s022 clade=c01 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain rheMac8 otherDb rheMac8 track chainRheMac3 subTrack primateChainNetViewchain off subGroups view=chain species=s023a clade=c01 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain rheMac3 otherDb rheMac3 track chainRheMac2 subTrack primateChainNetViewchain off subGroups view=chain species=s023b clade=c01 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain rheMac2 otherDb rheMac2 track chainPapAnu4 subTrack primateChainNetViewchain off subGroups view=chain species=s024 clade=c01 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain papAnu4 otherDb papAnu4 track chainPapAnu3 subTrack primateChainNetViewchain off subGroups view=chain species=s024 clade=c01 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain papAnu3 otherDb papAnu3 track chainPapAnu2 subTrack primateChainNetViewchain off subGroups view=chain species=s025 clade=c01 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain papAnu2 otherDb papAnu2 track chainPapHam1 subTrack primateChainNetViewchain off subGroups view=chain species=s026 clade=c01 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain papHam1 otherDb papHam1 track chainMacNem1 subTrack primateChainNetViewchain off subGroups view=chain species=s027 clade=c01 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain macNem1 otherDb macNem1 track chainCerAty1 subTrack primateChainNetViewchain off subGroups view=chain species=s028 clade=c01 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain cerAty1 otherDb cerAty1 track chainChlSab2 subTrack primateChainNetViewchain off subGroups view=chain species=s029 clade=c01 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain chlSab2 otherDb chlSab2 track chainChlSab1 subTrack primateChainNetViewchain off subGroups view=chain species=s030 clade=c01 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain chlSab1 otherDb chlSab1 track chainManLeu1 subTrack primateChainNetViewchain off subGroups view=chain species=s031 clade=c01 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain manLeu1 otherDb manLeu1 track chainSaiBol1 subTrack primateChainNetViewchain off subGroups view=chain species=s032 clade=c02 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain saiBol1 otherDb saiBol1 track chainAotNan1 subTrack primateChainNetViewchain off subGroups view=chain species=s033 clade=c02 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain aotNan1 otherDb aotNan1 track chainCalJac4 subTrack primateChainNetViewchain off subGroups view=chain species=s034a clade=c02 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain calJac4 otherDb calJac4 track chainCalJac3 subTrack primateChainNetViewchain off subGroups view=chain species=s034b clade=c02 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain calJac3 otherDb calJac3 track chainCalJac1 subTrack primateChainNetViewchain off subGroups view=chain species=s035 clade=c02 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain calJac1 otherDb calJac1 track chainCebCap1 subTrack primateChainNetViewchain off subGroups view=chain species=s036 clade=c02 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain cebCap1 otherDb cebCap1 track chainTarSyr2 subTrack primateChainNetViewchain off subGroups view=chain species=s037 clade=c02 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain tarSyr2 otherDb tarSyr2 track chainTarSyr1 subTrack primateChainNetViewchain off subGroups view=chain species=s038 clade=c02 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain tarSyr1 otherDb tarSyr1 track chainEulFla1 subTrack primateChainNetViewchain off subGroups view=chain species=s039 clade=c03 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain eulFla1 otherDb eulFla1 track chainEulMac1 subTrack primateChainNetViewchain off subGroups view=chain species=s040 clade=c03 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain eulMac1 otherDb eulMac1 track chainProCoq1 subTrack primateChainNetViewchain off subGroups view=chain species=s041 clade=c03 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain proCoq1 otherDb proCoq1 track chainMicMur3 subTrack primateChainNetViewchain off subGroups view=chain species=s042 clade=c03 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain micMur3 otherDb micMur3 track chainMicMur2 subTrack primateChainNetViewchain off subGroups view=chain species=s043 clade=c03 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain micMur2 otherDb micMur2 track chainMicMur1 subTrack primateChainNetViewchain off subGroups view=chain species=s044 clade=c03 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain micMur1 otherDb micMur1 track chainOtoGar3 subTrack primateChainNetViewchain off subGroups view=chain species=s045 clade=c03 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain otoGar3 otherDb otoGar3 track chainOtoGar1 subTrack primateChainNetViewchain off subGroups view=chain species=s046 clade=c03 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain otoGar1 otherDb otoGar1 track primateChainNetViewnet shortLabel Nets view net visibility dense subTrack primateChainNet track netHg38 subTrack primateChainNetViewnet off subGroups view=net species=s000a clade=c00 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign hg38 chainHg38 otherDb hg38 track netHg38Patch2 subTrack primateChainNetViewnet off subGroups view=net species=s000b clade=c00 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign hg38Patch2 chainHg38Patch2 otherDb hg38Patch2 track netHg18 subTrack primateChainNetViewnet off subGroups view=net species=s001 clade=c00 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign hg18 chainHg18 otherDb hg18 track netVenter1 subTrack primateChainNetViewnet off subGroups view=net species=s002 clade=c00 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign venter1 chainVenter1 otherDb venter1 track netPanTro6 subTrack primateChainNetViewnet off subGroups view=net species=s0025 clade=c00 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign panTro6 chainPanTro6 otherDb panTro6 track netPanTro5 subTrack primateChainNetViewnet on subGroups view=net species=s003 clade=c00 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign panTro5 chainPanTro5 otherDb panTro5 track netPanTro4 subTrack primateChainNetViewnet on subGroups view=net species=s004 clade=c00 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign panTro4 chainPanTro4 otherDb panTro4 track netPanTro3 subTrack primateChainNetViewnet off subGroups view=net species=s005 clade=c00 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign panTro3 chainPanTro3 otherDb panTro3 track netPanTro2 subTrack primateChainNetViewnet off subGroups view=net species=s006 clade=c00 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign panTro2 chainPanTro2 otherDb panTro2 track netPanPan3 subTrack primateChainNetViewnet off subGroups view=net species=s007b clade=c00 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign panPan3 chainPanPan3 otherDb panPan3 track netPanPan2 subTrack primateChainNetViewnet off subGroups view=net species=s007b clade=c00 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign panPan2 chainPanPan2 otherDb panPan2 track netPanPan1 subTrack primateChainNetViewnet off subGroups view=net species=s008 clade=c00 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign panPan1 chainPanPan1 otherDb panPan1 track netGorGor6 subTrack primateChainNetViewnet off subGroups view=net species=s009a clade=c00 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign gorGor6 chainGorGor6 otherDb gorGor6 track netGorGor5 subTrack primateChainNetViewnet off subGroups view=net species=s009b clade=c00 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign gorGor5 chainGorGor5 otherDb gorGor5 track netGorGor4 subTrack primateChainNetViewnet off subGroups view=net species=s010 clade=c00 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign gorGor4 chainGorGor4 otherDb gorGor4 track netGorGor3 subTrack primateChainNetViewnet off subGroups view=net species=s011 clade=c00 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign gorGor3 chainGorGor3 otherDb gorGor3 track netPonAbe3 subTrack primateChainNetViewnet off subGroups view=net species=s013a clade=c00 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign ponAbe3 chainPonAbe3 otherDb ponAbe3 track netPonAbe2 subTrack primateChainNetViewnet off subGroups view=net species=s013b clade=c00 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign ponAbe2 chainPonAbe2 otherDb ponAbe2 track netNomLeu3 subTrack primateChainNetViewnet off subGroups view=net species=s014 clade=c00 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign nomLeu3 chainNomLeu3 otherDb nomLeu3 track netNomLeu1 subTrack primateChainNetViewnet off subGroups view=net species=s015 clade=c00 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign nomLeu1 chainNomLeu1 otherDb nomLeu1 track netNasLar1 subTrack primateChainNetViewnet off subGroups view=net species=s016 clade=c01 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign nasLar1 chainNasLar1 otherDb nasLar1 track netRhiBie1 subTrack primateChainNetViewnet off subGroups view=net species=s017 clade=c01 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign rhiBie1 chainRhiBie1 otherDb rhiBie1 track netRhiRox1 subTrack primateChainNetViewnet off subGroups view=net species=s018 clade=c01 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign rhiRox1 chainRhiRox1 otherDb rhiRox1 track netColAng1 subTrack primateChainNetViewnet off subGroups view=net species=s019 clade=c01 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign colAng1 chainColAng1 otherDb colAng1 track netMacFas5 subTrack primateChainNetViewnet off subGroups view=net species=s020 clade=c01 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign macFas5 chainMacFas5 otherDb macFas5 track netRheMac10 subTrack primateChainNetViewnet off subGroups view=net species=s021 clade=c01 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign rheMac10 chainRheMac10 otherDb rheMac10 track netRheMac8 subTrack primateChainNetViewnet on subGroups view=net species=s022 clade=c01 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign rheMac8 chainRheMac8 otherDb rheMac8 track netRheMac3 subTrack primateChainNetViewnet on subGroups view=net species=s023a clade=c01 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign rheMac3 chainRheMac3 otherDb rheMac3 track netRheMac2 subTrack primateChainNetViewnet off subGroups view=net species=s023b clade=c01 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign rheMac2 chainRheMac2 otherDb rheMac2 track netPapAnu4 subTrack primateChainNetViewnet off subGroups view=net species=s024 clade=c01 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign papAnu4 chainPapAnu4 otherDb papAnu4 track netPapAnu3 subTrack primateChainNetViewnet off subGroups view=net species=s024 clade=c01 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign papAnu3 chainPapAnu3 otherDb papAnu3 track netPapAnu2 subTrack primateChainNetViewnet off subGroups view=net species=s025 clade=c01 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign papAnu2 chainPapAnu2 otherDb papAnu2 track netPapHam1 subTrack primateChainNetViewnet off subGroups view=net species=s026 clade=c01 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign papHam1 chainPapHam1 otherDb papHam1 track netMacNem1 subTrack primateChainNetViewnet off subGroups view=net species=s027 clade=c01 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign macNem1 chainMacNem1 otherDb macNem1 track netCerAty1 subTrack primateChainNetViewnet off subGroups view=net species=s028 clade=c01 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign cerAty1 chainCerAty1 otherDb cerAty1 track netChlSab2 subTrack primateChainNetViewnet off subGroups view=net species=s029 clade=c01 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign chlSab2 chainChlSab2 otherDb chlSab2 track netChlSab1 subTrack primateChainNetViewnet off subGroups view=net species=s030 clade=c01 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign chlSab1 chainChlSab1 otherDb chlSab1 track netManLeu1 subTrack primateChainNetViewnet off subGroups view=net species=s031 clade=c01 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign manLeu1 chainManLeu1 otherDb manLeu1 track netSaiBol1 subTrack primateChainNetViewnet off subGroups view=net species=s032 clade=c02 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign saiBol1 chainSaiBol1 otherDb saiBol1 track netAotNan1 subTrack primateChainNetViewnet off subGroups view=net species=s033 clade=c02 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign aotNan1 chainAotNan1 otherDb aotNan1 track netCalJac4 subTrack primateChainNetViewnet on subGroups view=net species=s034a clade=c02 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign calJac4 chainCalJac4 otherDb calJac4 track netCalJac3 subTrack primateChainNetViewnet on subGroups view=net species=s034b clade=c02 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign calJac3 chainCalJac3 otherDb calJac3 track netCalJac1 subTrack primateChainNetViewnet off subGroups view=net species=s035 clade=c02 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign calJac1 chainCalJac1 otherDb calJac1 track netCebCap1 subTrack primateChainNetViewnet off subGroups view=net species=s036 clade=c02 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign cebCap1 chainCebCap1 otherDb cebCap1 track netTarSyr2 subTrack primateChainNetViewnet off subGroups view=net species=s037 clade=c02 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign tarSyr2 chainTarSyr2 otherDb tarSyr2 track netTarSyr1 subTrack primateChainNetViewnet off subGroups view=net species=s038 clade=c02 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign tarSyr1 chainTarSyr1 otherDb tarSyr1 track netEulFla1 subTrack primateChainNetViewnet off subGroups view=net species=s039 clade=c03 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign eulFla1 chainEulFla1 otherDb eulFla1 track netEulMac1 subTrack primateChainNetViewnet off subGroups view=net species=s040 clade=c03 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign eulMac1 chainEulMac1 otherDb eulMac1 track netProCoq1 subTrack primateChainNetViewnet off subGroups view=net species=s041 clade=c03 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign proCoq1 chainProCoq1 otherDb proCoq1 track netMicMur3 subTrack primateChainNetViewnet off subGroups view=net species=s042 clade=c03 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign micMur3 chainMicMur3 otherDb micMur3 track netMicMur2 subTrack primateChainNetViewnet off subGroups view=net species=s043 clade=c03 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign micMur2 chainMicMur2 otherDb micMur2 track netMicMur1 subTrack primateChainNetViewnet off subGroups view=net species=s044 clade=c03 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign micMur1 chainMicMur1 otherDb micMur1 track netOtoGar3 subTrack primateChainNetViewnet on subGroups view=net species=s045 clade=c03 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign otoGar3 chainOtoGar3 otherDb otoGar3 track netOtoGar1 subTrack primateChainNetViewnet off subGroups view=net species=s046 clade=c03 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign otoGar1 chainOtoGar1 otherDb otoGar1