Commits for braney

v452_base to v453_preview (2023-08-07 to 2023-08-13) v453

13b584581e6d7b1860e0cab97adc3594b1899308 Mon Aug 7 12:05:10 2023 -0700

• add instaPort to bigBed support
  • src/hg/hgTracks/bigBedTrack.c - lines changed 27, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c - lines changed 12, context: html, text, full: html, text
  • src/hg/hgc/bigBedClick.c - lines changed 23, context: html, text, full: html, text
  • src/hg/inc/bed.h - lines changed 3, context: html, text, full: html, text
  • src/hg/inc/genePred.h - lines changed 3, context: html, text, full: html, text
  • src/hg/inc/liftOver.h - lines changed 12, context: html, text, full: html, text
  • src/hg/lib/bed.c - lines changed 8, context: html, text, full: html, text
  • src/hg/lib/genePred.c - lines changed 25, context: html, text, full: html, text
  • src/hg/lib/instaPort.c - lines changed 111, context: html, text, full: html, text
  • src/hg/lib/liftOver.c - lines changed 48, context: html, text, full: html, text
  • src/hg/lib/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/trackDbCustom.c - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/trackHub.c - lines changed 1, context: html, text, full: html, text

08b22891ddc65ed6275151a0ff4b07ac4a8cb1b0 Wed Aug 9 09:25:02 2023 -0700

• oops. need instaPort.h !
  • src/hg/inc/instaPort.h - lines changed 18, context: html, text, full: html, text

fd85559cf680f17b7c31e6d0028149afecc49bb7 Fri Aug 11 10:50:47 2023 -0700

• add bigChainToChain command
  • src/hg/utils/bigChainToChain/bigChainToChain.c - lines changed 50, context: html, text, full: html, text
  • src/hg/utils/bigChainToChain/makefile - lines changed 3, context: html, text, full: html, text
  • src/hg/utils/makefile - lines changed 1, context: html, text, full: html, text

3a91631b10c28b2f0f4d0f51ce2db8cbd9dee0a7 Sat Aug 12 16:13:11 2023 -0700

• instructions for hprc arrangement tracks
  • src/hg/makeDb/doc/hg38/hprcRearrange.txt - lines changed 57, context: html, text, full: html, text

3e39804e374b48ecc82eec8ae77b9de1a0846173 Sat Aug 12 16:16:44 2023 -0700

• second cut at HPRC rearrangement summary tracks
  • src/hg/lib/chainArrange.as - lines changed 14, context: html, text, full: html, text
  • src/hg/utils/bigChainArrange/bigChainArrange.c - lines changed 135, context: html, text, full: html, text
  • src/hg/utils/bigChainArrange/makefile - lines changed 3, context: html, text, full: html, text
  • src/utils/bedCollect/bedCollect.c - lines changed 83, context: html, text, full: html, text
  • src/utils/bedCollect/makefile - lines changed 3, context: html, text, full: html, text