682135a7366fcde9b3314ee6c5093cec2a71052a hiram Fri Aug 11 21:56:17 2023 -0700 correctly use bigClusterHub for doIdKeys no redmine diff --git src/hg/utils/automation/doAssemblyHub.pl src/hg/utils/automation/doAssemblyHub.pl index 289b29e..3e45b51 100755 --- src/hg/utils/automation/doAssemblyHub.pl +++ src/hg/utils/automation/doAssemblyHub.pl @@ -1465,31 +1465,31 @@ if (! needsUpdate("$buildDir/$defaultName.2bit", "$runDir/$defaultName.keySignature.txt")) { &HgAutomate::verbose(1, "# idKeys step previously completed\n"); return; } &HgAutomate::mustMkdir($runDir); my $whatItDoes = "construct ID key data for each contig/chr"; my $bossScript = newBash HgRemoteScript("$runDir/doIdKeys.bash", $workhorse, $runDir, $whatItDoes); $bossScript->add(<<_EOF_ export asmId=$defaultName export twoBit=$buildDir/\$asmId.2bit if [ ../../\$asmId.2bit -nt \$asmId.keySignature.txt ]; then - doIdKeys.pl \$asmId -buildDir=`pwd` -twoBit=\$twoBit + doIdKeys.pl -bigClusterHub=$bigClusterHub \$asmId -buildDir=`pwd` -twoBit=\$twoBit touch -r \$twoBit \$asmId.keySignature.txt else printf "# idKeys step previously completed\\n" 1>&2 exit 0 fi _EOF_ ); $bossScript->execute(); } # doIdKeys ######################################################################### # * step: addMask [workhorse] sub doAddMask { my $runDir = "$buildDir/trackData/addMask";