6765acb3e5e0fe4dec0403f7803ca170c080f19c angie Thu Aug 17 20:19:09 2023 -0700 Update representative for XBB.1.5 to accommodate shuffling of branches. diff --git src/hg/utils/otto/sarscov2phylo/branchSpecificMask.yml src/hg/utils/otto/sarscov2phylo/branchSpecificMask.yml index f5135f4..cf04d29 100644 --- src/hg/utils/otto/sarscov2phylo/branchSpecificMask.yml +++ src/hg/utils/otto/sarscov2phylo/branchSpecificMask.yml @@ -145,24 +145,24 @@ reversions: [ T2790C, T3037C, A4184G, T4321C, T9344C, G9424A, T10198C, C17859T, G19326A, T21618C, C21810T, A22000C, G22109C, C22577G, A22578G, C22599G, A22664C, C22679T, T22686C, G22688A, T22813G, C22895G, C22896T, A22898G, G22942T, A22992G, A22995C, C23013A, C23019T, C23031T, T24424A, A24469T, T25000C, T26060C, G26577C, A26709G, T26858C, T27807C ] XBB.1: # Inherits from XBB # Here I'm going a bit past the technical start of XBB.1, to include G27915T to be more sure # that it's XBB.1 before we mask out the defining mutation of XBB.1 representative: England/LSPA-32578111/2022 reversions: [ T22317G ] XBB.1.5: # Inherits from XBB.1 # Don't believe reversions on 27915 once we're as far as XBB.1.* - representative: England/BRBR-32671539/2023 + representative: England/BRBR-32671539/2022 reversions: [ T27915G ] XBC: # Inherits nothing! Should find out its deletions. # Cornelius Roemer requested to mask several reversions in # https://github.com/cov-lineages/pango-designation/issues/1100#issuecomment-1426502678 representative: Philippines/PH-VUI-142736/2022 reversions: [ G5584A, T13019C, T22329C, T25000C, C27718T, T28271A ]