Commits for braney

v453_preview to v453_preview2 (2023-08-13 to 2023-08-21) v453

cc15a08c33bde6a8bf15b0bf78548ef2b466a560 Sun Aug 13 12:29:29 2023 -0700

• correct the name for chainArrange
  • src/hg/lib/chainArrange.as - lines changed 2, context: html, text, full: html, text

8e3a8202a0a0503451ab3a466683448b704c956d Sun Aug 13 12:42:04 2023 -0700

• add HPRC rearrangement summary tracks to hg38
  • src/hg/makeDb/trackDb/human/hg38/hprcArr.ra - lines changed 98, context: html, text, full: html, text

4cf25e53e77ad1de56b7bd119e8a473f58c9fd32 Sun Aug 13 12:58:25 2023 -0700

• add hprcArr.ra to hg38/trackDb.ra
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 8, context: html, text, full: html, text

e0ca9650735ee5e9dd92811e127e15b74e1ac060 Mon Aug 14 14:03:40 2023 -0700

• add a tiny bit of method doc to hprc rearrangement summary tracks
  • src/hg/makeDb/trackDb/human/hg38/hprcArrV1.html - lines changed 9, context: html, text, full: html, text

be4195f2c5ee017ac4ca603f7742bb70ed457e74 Mon Aug 14 14:23:51 2023 -0700

• take out a pesky printf that will become an optional dialog in the future
  • src/hg/lib/instaPort.c - lines changed 2, context: html, text, full: html, text

f59ccdee6ad81274ffd827d1fed343cb6ba871a9 Mon Aug 14 14:54:58 2023 -0700

• don't open SQL connection is pcrResults unless it's using a target database (which isn't supported on hubs)
  • src/hg/hgTracks/hgTracks.c - lines changed 3, context: html, text, full: html, text

474877488f16b5c6888313e4d25dc4b89c7a6896 Thu Aug 17 15:44:18 2023 -0700

• a utility to find inversions and duplications in a set of chains
  • src/hg/utils/chainArrange/chainArrange.c - lines changed 158, context: html, text, full: html, text
  • src/hg/utils/chainArrange/makefile - lines changed 3, context: html, text, full: html, text

85b69d6ab5a3316fa2576a446cc5c55d86aa0d52 Fri Aug 18 17:02:02 2023 -0700

• all users to specify the label for the field that controls squishyPack
  • src/hg/lib/hui.c - lines changed 4, context: html, text, full: html, text

3299cac6d6b5348138c1517187311a7a914cb030 Fri Aug 18 17:26:49 2023 -0700

• add squishyPackLabel to hg38 knownGene
  • src/hg/makeDb/trackDb/human/hg38/knownGene.alpha.ra - lines changed 1, context: html, text, full: html, text

98d908ff5f395fb6dc954d46cd330b5f6d509ae0 Fri Aug 18 17:30:10 2023 -0700

• oops... need to update tagTypes.tab
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 1, context: html, text, full: html, text