167a944687bd484f0dc6c8821749c08053a2a0a5
hiram
  Sun Aug 13 18:47:43 2023 -0700
add -ram argument to doAugustus to allow smaller ram size on the paraRun, this should be an argument to the paraRun setup no redmine

diff --git src/hg/utils/automation/doAssemblyHub.pl src/hg/utils/automation/doAssemblyHub.pl
index 3e45b51..65f2320 100755
--- src/hg/utils/automation/doAssemblyHub.pl
+++ src/hg/utils/automation/doAssemblyHub.pl
@@ -1956,31 +1956,31 @@
        &HgAutomate::verbose(1, "# augustus step previously completed\n");
        return;
      }
   }
 
   &HgAutomate::mustMkdir($runDir);
 
   my $whatItDoes = "run Augustus gene prediction procedures";
   my $bossScript = newBash HgRemoteScript("$runDir/doAugustus.bash",
                     $workhorse, $runDir, $whatItDoes);
 
   $bossScript->add(<<_EOF_
 export asmId=$defaultName
 
 if [ $buildDir/\$asmId.2bit -nt \$asmId.augustus.bb ]; then
-  time (~/kent/src/hg/utils/automation/doAugustus.pl -stop=makeGp -buildDir=`pwd` -dbHost=$dbHost \\
+  time (~/kent/src/hg/utils/automation/doAugustus.pl -ram=6g -stop=makeGp -buildDir=`pwd` -dbHost=$dbHost \\
     -bigClusterHub=$bigClusterHub -species=$augustusSpecies -workhorse=$workhorse \\
     -noDbGenePredCheck -maskedSeq=$buildDir/\$asmId.2bit \$asmId) > makeDb.log 2>&1
   time (~/kent/src/hg/utils/automation/doAugustus.pl -continue=cleanup -stop=cleanup -buildDir=`pwd` -dbHost=$dbHost \\
     -bigClusterHub=$bigClusterHub -species=$augustusSpecies -workhorse=$workhorse \\
     -noDbGenePredCheck -maskedSeq=$buildDir/\$asmId.2bit \$asmId) > cleanup.log 2>&1
 else
   printf "# augustus genes step previously completed\\n" 1>&2
 fi
 _EOF_
   );
   $bossScript->execute();
 } # doAugustus
 
 #########################################################################
 # * step: xenoRefGene [bigClusterHub]