b671ee33a104a5b4e1a93e23271db96455381898
max
  Mon Aug 21 03:28:55 2023 -0700
removing submission ID field from clinvar tracks hgc page, refs #31970

diff --git src/hg/makeDb/trackDb/human/trackDb.clinvar.ra src/hg/makeDb/trackDb/human/trackDb.clinvar.ra
index 743473b..01f4966 100644
--- src/hg/makeDb/trackDb/human/trackDb.clinvar.ra
+++ src/hg/makeDb/trackDb/human/trackDb.clinvar.ra
@@ -18,49 +18,51 @@
         group phenDis
         itemRgb on
         priority 1
         type bigBed 12 +
         showCfg on
         # note that you cannot change these values. Old carts will contain them. If you must change these, you'll have to rename
         # the field, which will reset the cart variables. Or use the cart rewrite mechanism. You can add more values, though
         filterValues._clinSignCode BN|benign,LB|likely benign,CF|conflicting,PG|pathogenic,LP|likely pathogenic,RF|risk factor,OT|other,VUS|vus
         filterType._clinSignCode multiple
         filterValues._originCode GERM|germline,SOM|somatic,GERMSOM|germline/somatic,UNK|unknown
         filterType._originCode multiple
         filterLabel._originCode Alelle Origin
         filterValues._allTypeCode SUBST|single nucleotide variant - SUBST,STRUCT|translocation and fusion - STRUCT,LOSS|deletion and copy loss - LOSS,GAIN|duplication and copy gain - GAIN,INS|indel and insertion - INS,INV|inversion - INV,SEQALT|undetermined - SEQALT,SEQLEN|repeat change - SEQLEN
         filterType._allTypeCode multiple
         filter._varLen 0
+        skipFields rcvAcc
         filterByRange._varLen on
         filterLimits._varLen 0:49
         filterValues.molConseq genic downstream transcript variant|genic downstream transcript variant,no sequence alteration|no sequence alteration,inframe indel|inframe indel,stop lost|stop lost,genic upstream transcript variant|genic upstream transcript variant,initiatior codon variant|initiatior codon variant,inframe insertion|inframe insertion,inframe deletion|inframe deletion,splice acceptor variant|splice acceptor variant,splice donor variant|splice donor variant,5 prime UTR variant|5 prime UTR variant,nonsense|nonsense,non-coding transcript variant|non-coding transcript variant,3 prime UTR variant|3 prime UTR variant,frameshift variant|frameshift variant,intron variant|intron variant,synonymous variant|synonymous variant,missense variant|missense variant,|unknown
         mouseOverField _mouseOver
         bigDataUrl /gbdb/$D/bbi/clinvar/clinvarMain.bb
         urls rcvAcc="https://www.ncbi.nlm.nih.gov/clinvar/$$/" geneId="https://www.ncbi.nlm.nih.gov/gene/$$" snpId="https://www.ncbi.nlm.nih.gov/snp/$$" nsvId="https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/" origName="https://www.ncbi.nlm.nih.gov/clinvar/variation/$$/"
         noScoreFilter on
         searchIndex _dbVarSsvId
         maxWindowCoverage 10000000
 
         track clinvarCnv
         parent clinvar
         shortLabel ClinVar CNVs
         longLabel ClinVar Copy Number Variants >= 50bp
         visibility hide
         type bigBed 12 +
         itemRgb on
         group phenDis
         priority 2
+        skipFields rcvAcc
         # note that you cannot change these values. Old carts will contain them. If you must change these, you'll have to rename
         # the field, which will reset the cart variables. Or use the cart rewrite mechanism. You can add more values, though
         filterValues._originCode GERM|germline,SOM|somatic,GERMSOM|germline/somatic,NOVO|de novo,UNK|unknown
         filterType._originCode multiple
         filterLabel._originCode Alelle Origin
         filterValues._allTypeCode SUBST|single nucleotide variant - SUBST,STRUCT|translocation and fusion - STRUCT,LOSS|deletion and copy loss - LOSS,GAIN|duplication and copy gain - GAIN,INS|indel and insertion - INS,INV|inversion - INV,SEQALT|undetermined - SEQALT,SEQLEN|repeat change - SEQLEN
         filterType._allTypeCode multiple
         filterValues._clinSignCode BN|benign,LB|likely benign,CF|conflicting,PG|pathogenic,LP|likely pathogenic,UC|uncertain,OT|other
         filterType._clinSignCode multiple
         filter._varLen 50:999999999
         filterByRange._varLen on
         filterLimits._varLen 50:999999999
         mouseOverField _mouseOver
         bigDataUrl /gbdb/$D/bbi/clinvar/clinvarCnv.bb
         mergeSpannedItems on