a6288fe651a8fa52b1510ee6c6b7ecb9db00dcd6
angie
  Thu Sep 14 10:02:50 2023 -0700
Added description of MicrobeTrace to 'More information' section.

diff --git src/hg/hgPhyloPlace/hgPhyloPlace.c src/hg/hgPhyloPlace/hgPhyloPlace.c
index 740553e..4dc7bca 100644
--- src/hg/hgPhyloPlace/hgPhyloPlace.c
+++ src/hg/hgPhyloPlace/hgPhyloPlace.c
@@ -368,31 +368,38 @@
          "<a href='https://www.ncbi.nlm.nih.gov/labs/virus/vssi/#/virus?SeqType_s=Nucleotide&VirusLineage_ss=Monkeypox%20virus%20(monkeypox),%20taxid:10244' "
          "target=_blank>NCBI Virus</a>)\n"
          "and your sequence's placement in a global phylogenetic tree.\n"
          );
     }
 puts("Placement is performed by\n"
      "<a href='https://github.com/yatisht/usher' target=_blank>"
      "Ultrafast Sample placement on Existing tRee (UShER)</a> "
      "(<a href='https://www.nature.com/articles/s41588-021-00862-7' target=_blank>"
      "Turakhia <em>et al.</em></a>).  UShER also generates local subtrees to show samples "
      "in the context of the most closely related sequences.  The subtrees can be visualized "
      "as Genome Browser custom tracks and/or using "
      "<a href='https://nextstrain.org' target=_blank>Nextstrain</a>'s interactive display "
      "which supports "
      "<a href='"NEXTSTRAIN_DRAG_DROP_DOC"' "
-     "target=_blank>drag-and-drop</a> of local metadata that remains on your computer.</p>\n");
+     "target=_blank>drag-and-drop</a> of local metadata that remains on your computer.\n");
+if (microbeTraceHost())
+    printf("If the subtree size is set to %d or smaller, then subtrees can also be visualized in "
+           "<a href='https://github.com/CDCgov/MicrobeTrace/wiki' target=_blank>MicrobeTrace</a>, "
+           "a network visualization tool that integrates and overlays genomic, laboratory, and "
+           "epidemiologic data and offers multiple visualization options of your combined data.\n",
+           MAX_MICROBETRACE_SUBTREE_SIZE);
+puts("</p>");
 if (sameString(db, "wuhCor1"))
     {
     puts("<p>\n"
          "GISAID data displayed in the Genome Browser are subject to GISAID's\n"
          "<a href='https://www.gisaid.org/registration/terms-of-use/' target=_blank>"
          "Terms and Conditions</a>.\n"
          "SARS-CoV-2 genome sequences and metadata are available for download from\n"
          "<a href='https://gisaid.org' target=_blank>GISAID</a> EpiCoV&trade;.\n"
          "</p>");
     puts("<p>\n"
          "<a href='/covid19.html'>COVID-19 Pandemic Resources at UCSC</a></p>\n");
     }
 puts("</div>");
 puts("</div>");
 puts("<div class='readableWidth'>");