5d9b2264aab7759c0f58dfaa3ec1523d295eb759
hiram
  Wed Aug 30 10:42:32 2023 -0700
fixup release tag issues with include statement to make the tdbQuery -check -release=public -strict "select count(*) from *" >/dev/null be silent no redmine

diff --git src/hg/makeDb/trackDb/chainNetGCA_009914755.4.trackDb.ra src/hg/makeDb/trackDb/chainNetGCA_009914755.4.trackDb.ra
new file mode 100644
index 0000000..76dee68
--- /dev/null
+++ src/hg/makeDb/trackDb/chainNetGCA_009914755.4.trackDb.ra
@@ -0,0 +1,98 @@
+##############################################################################
+# GCA_009914755.4_CHM13_T2T_v2.0 - human - Homo sapiens - taxId: 9606 - primate
+##############################################################################
+track chainNetGCA_009914755.4
+compositeTrack on
+shortLabel CHM13 T2T Chain/Net
+longLabel CHM13 T2T (Jan. 2022 GCA_009914755.4_CHM13_T2T_v2.0), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+group compGeno
+noInherit on
+priority 100.1
+color 0,0,0
+altColor 100,50,0
+type bed 3
+sortOrder view=+
+matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
+chainMinScore 5000
+chainLinearGap medium
+matrixHeader A, C, G, T
+otherDb GCA_009914755.4
+html chainNet
+
+    track chainNetGCA_009914755.4Viewchain
+    shortLabel Chain
+    view chain
+    visibility pack
+    parent chainNetGCA_009914755.4
+    spectrum on
+
+        track chainGCA_009914755.4
+        parent chainNetGCA_009914755.4Viewchain
+        subGroups view=chain
+        shortLabel CHM13 T2T Chain
+        longLabel CHM13 T2T (Jan. 2022 GCA_009914755.4_CHM13_T2T_v2.0) Chained Alignments
+        type bigChain GCA_009914755.4
+        bigDataUrl /gbdb/$D/bbi/chainNet/$D.chainGCA_009914755.4.bb
+        linkDataUrl /gbdb/$D/bbi/chainNet/$D.chainGCA_009914755.4Link.bb
+
+        track chainSynGCA_009914755.4
+        parent chainNetGCA_009914755.4Viewchain
+        subGroups view=chain
+        shortLabel CHM13 T2T Chain
+        longLabel CHM13 T2T (Jan. 2022 GCA_009914755.4_CHM13_T2T_v2.0) Syntenic Chained Alignments
+        type bigChain GCA_009914755.4
+        bigDataUrl /gbdb/$D/bbi/chainNet/$D.chainSynGCA_009914755.4.bb
+        linkDataUrl /gbdb/$D/bbi/chainNet/$D.chainSynGCA_009914755.4Link.bb
+
+        track chainRBestGCA_009914755.4
+        parent chainNetGCA_009914755.4Viewchain
+        subGroups view=chain
+        shortLabel CHM13 T2T Chain
+        longLabel CHM13 T2T (Jan. 2022 GCA_009914755.4_CHM13_T2T_v2.0) Reciprocal Best Chained Alignments
+        type bigChain GCA_009914755.4
+        bigDataUrl /gbdb/$D/bbi/chainNet/$D.chainRBestGCA_009914755.4.bb
+        linkDataUrl /gbdb/$D/bbi/chainNet/$D.chainRBestGCA_009914755.4Link.bb
+
+    track mafNetGCA_009914755.4Viewnet
+    shortLabel Net
+    view net
+    visibility full
+    parent chainNetGCA_009914755.4
+
+        track netGCA_009914755.4
+        parent mafNetGCA_009914755.4Viewnet
+        subGroups view=net
+        shortLabel CHM13 T2T mafNet
+        longLabel CHM13 T2T (Jan. 2022 GCA_009914755.4_CHM13_T2T_v2.0) mafNet Alignment
+        type bigMaf
+        bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCA_009914755.4.net.bb
+        summary /gbdb/$D/bbi/chainNet/$D.GCA_009914755.4.net.summary.bb
+        speciesOrder GCA_009914755.4
+        speciesLabels GCA_009914755.4="CHM13 T2T"
+
+        track synNetGCA_009914755.4
+        parent mafNetGCA_009914755.4Viewnet
+        subGroups view=net
+        shortLabel CHM13 T2T mafNet
+        longLabel CHM13 T2T (Jan. 2022 GCA_009914755.4_CHM13_T2T_v2.0) Syntenic Net Alignment
+        type bigMaf
+        bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCA_009914755.4.synNet.bb
+        summary /gbdb/$D/bbi/chainNet/$D.GCA_009914755.4.synNet.summary.bb
+        speciesOrder GCA_009914755.4
+        speciesLabels GCA_009914755.4="CHM13 T2T"
+
+        track rbestNetGCA_009914755.4
+        parent mafNetGCA_009914755.4Viewnet
+        subGroups view=net
+        shortLabel CHM13 T2T mafNet
+        longLabel CHM13 T2T (Jan. 2022 GCA_009914755.4_CHM13_T2T_v2.0) Reciprocal Best Net Alignment
+        type bigMaf
+        bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCA_009914755.4.rbestNet.bb
+        summary /gbdb/$D/bbi/chainNet/$D.GCA_009914755.4.rbestNet.summary.bb
+        speciesOrder GCA_009914755.4
+        speciesLabels GCA_009914755.4="CHM13 T2T"
+
+