5d9b2264aab7759c0f58dfaa3ec1523d295eb759
hiram
  Wed Aug 30 10:42:32 2023 -0700
fixup release tag issues with include statement to make the tdbQuery -check -release=public -strict "select count(*) from *" >/dev/null be silent no redmine

diff --git src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra
index f1c2725..5629919 100644
--- src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra
+++ src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra
@@ -86,124 +86,31 @@
 
         track rbestNetHs1
         parent mafNetHs1Viewnet
         subGroups view=net
         shortLabel hs1/CHM13 T2T mafNet
         longLabel hs1/CHM13 T2T (Jan. 2022 hs1/GCA_009914755.4_CHM13_T2T_v2.0) Reciprocal Best Net Alignment
         type bigMaf
         bigDataUrl /gbdb/$D/chainNet/$D.hs1.rbestNet.bb
         summary /gbdb/$D/chainNet/$D.hs1.rbestNet.summary.bb
         speciesOrder hs1
         speciesLabels hs1="CHM13 T2T"
 
 ##############################################################################
 # GCA_009914755.4_CHM13_T2T_v2.0 - human - Homo sapiens - taxId: 9606 - primate
 ##############################################################################
-track chainNetGCA_009914755.4
-compositeTrack on
-shortLabel CHM13 T2T Chain/Net
-longLabel CHM13 T2T (Jan. 2022 GCA_009914755.4_CHM13_T2T_v2.0), Chain and Net Alignments
-subGroup1 view Views chain=Chain net=Net
-dragAndDrop subTracks
-visibility hide
-group compGeno
-noInherit on
-priority 100.1
-color 0,0,0
-altColor 100,50,0
-type bed 3
-sortOrder view=+
-matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
-chainMinScore 5000
-chainLinearGap medium
-matrixHeader A, C, G, T
-otherDb GCA_009914755.4
-html chainNet
-release alpha
-
-    track chainNetGCA_009914755.4Viewchain
-    shortLabel Chain
-    view chain
-    visibility pack
-    parent chainNetGCA_009914755.4
-    spectrum on
-
-        track chainGCA_009914755.4
-        parent chainNetGCA_009914755.4Viewchain
-        subGroups view=chain
-        shortLabel CHM13 T2T Chain
-        longLabel CHM13 T2T (Jan. 2022 GCA_009914755.4_CHM13_T2T_v2.0) Chained Alignments
-        type bigChain GCA_009914755.4
-        bigDataUrl /gbdb/$D/bbi/chainNet/$D.chainGCA_009914755.4.bb
-        linkDataUrl /gbdb/$D/bbi/chainNet/$D.chainGCA_009914755.4Link.bb
-
-        track chainSynGCA_009914755.4
-        parent chainNetGCA_009914755.4Viewchain
-        subGroups view=chain
-        shortLabel CHM13 T2T Chain
-        longLabel CHM13 T2T (Jan. 2022 GCA_009914755.4_CHM13_T2T_v2.0) Syntenic Chained Alignments
-        type bigChain GCA_009914755.4
-        bigDataUrl /gbdb/$D/bbi/chainNet/$D.chainSynGCA_009914755.4.bb
-        linkDataUrl /gbdb/$D/bbi/chainNet/$D.chainSynGCA_009914755.4Link.bb
-
-        track chainRBestGCA_009914755.4
-        parent chainNetGCA_009914755.4Viewchain
-        subGroups view=chain
-        shortLabel CHM13 T2T Chain
-        longLabel CHM13 T2T (Jan. 2022 GCA_009914755.4_CHM13_T2T_v2.0) Reciprocal Best Chained Alignments
-        type bigChain GCA_009914755.4
-        bigDataUrl /gbdb/$D/bbi/chainNet/$D.chainRBestGCA_009914755.4.bb
-        linkDataUrl /gbdb/$D/bbi/chainNet/$D.chainRBestGCA_009914755.4Link.bb
-
-    track mafNetGCA_009914755.4Viewnet
-    shortLabel Net
-    view net
-    visibility full
-    parent chainNetGCA_009914755.4
-
-        track netGCA_009914755.4
-        parent mafNetGCA_009914755.4Viewnet
-        subGroups view=net
-        shortLabel CHM13 T2T mafNet
-        longLabel CHM13 T2T (Jan. 2022 GCA_009914755.4_CHM13_T2T_v2.0) mafNet Alignment
-        type bigMaf
-        bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCA_009914755.4.net.bb
-        summary /gbdb/$D/bbi/chainNet/$D.GCA_009914755.4.net.summary.bb
-        speciesOrder GCA_009914755.4
-        speciesLabels GCA_009914755.4="CHM13 T2T"
-
-        track synNetGCA_009914755.4
-        parent mafNetGCA_009914755.4Viewnet
-        subGroups view=net
-        shortLabel CHM13 T2T mafNet
-        longLabel CHM13 T2T (Jan. 2022 GCA_009914755.4_CHM13_T2T_v2.0) Syntenic Net Alignment
-        type bigMaf
-        bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCA_009914755.4.synNet.bb
-        summary /gbdb/$D/bbi/chainNet/$D.GCA_009914755.4.synNet.summary.bb
-        speciesOrder GCA_009914755.4
-        speciesLabels GCA_009914755.4="CHM13 T2T"
-
-        track rbestNetGCA_009914755.4
-        parent mafNetGCA_009914755.4Viewnet
-        subGroups view=net
-        shortLabel CHM13 T2T mafNet
-        longLabel CHM13 T2T (Jan. 2022 GCA_009914755.4_CHM13_T2T_v2.0) Reciprocal Best Net Alignment
-        type bigMaf
-        bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCA_009914755.4.rbestNet.bb
-        summary /gbdb/$D/bbi/chainNet/$D.GCA_009914755.4.rbestNet.summary.bb
-        speciesOrder GCA_009914755.4
-        speciesLabels GCA_009914755.4="CHM13 T2T"
+include chainNetGCA_009914755.4.trackDb.ra alpha
 
 ##############################################################################
 # GCA_901343595v1_MONAX5 - woodchuck - Marmota monax - mammal
 ##############################################################################
 track chainNetGCA_901343595v1
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 200.3
 color 0,0,0