cb8a05fe7553710ba59e92af53662f2e524c232e hiram Sun Sep 10 10:30:25 2023 -0700 RefSeq update brings in a number of obsolete assemblies refs #29545 diff --git src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt index 7b61a33..cac7d90 100644 --- src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt +++ src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt @@ -117,37 +117,46 @@ GCA_009873245.2_mBalMus1.v2 mammals GCA_009914755.4_T2T-CHM13v2.0 primates GCA_010909765.1_sAmbRad1.pri vertebrate GCA_011004845.1_fEsoLuc1.pri fish GCA_011064685.1_ZJU_Sfru_1.0 invertebrate GCA_011100635.1_mTriVul1.pri mammals GCA_011762505.1_mArvNil1.pat.X mammals GCA_011762595.1_mTurTru1.mat.Y mammals GCA_012275295.1_bMelUnd1.mat.Z birds GCA_014108255.1_mRhiFer1.p mammals GCA_014356525.1_ASM1435652v1 invertebrate GCA_014839835.1_bDryPub1.pri birds GCA_014905235.2_Bmori_2016v1.0 invertebrate GCA_015227675.2_mRatBN7.2 mammals GCA_015227805.2_bHirRus1.pri.v2 birds +GCA_015227805.3_bHirRus1.pri.v3 birds GCA_016128335.1_ZJU1.0 birds GCA_016432865.1_AdamAnt mammals GCA_017976375.1_bCucCan1.pri birds GCA_018139145.1_ASM1813914v1 birds GCA_018296145.1_Otsh_v2.0 fish GCA_020740725.1_bCorHaw1.pri.cur birds GCA_020740795.1_bApuApu2.pri.cur birds +GCA_020826845.1_mDicBic1.mat.cur mammals +GCA_023634155.1_bFalPer1.pri birds +GCA_023634085.1_bFalChe1.pri birds +GCA_023638135.1_bFalBia1.pri birds +GCA_026419965.1_mKogBre1_haplotype_1 mammals +GCA_027887145.1_bAmmCau1.pri birds +GCA_027887165.1_mMonDom1.pri mammals +GCA_028018845.1_bMelGeo1.pri birds GCA_028500815.1_bRisTri1.patW.cur.20221130 birds GCA_900006655.3_Susie3 primates GCA_900094665.2_CAROLI_EIJ_v1.1 mammals GCA_900324465.2_fAnaTes1.2 fish GCA_900634415.1_fCotGob3.1 fish GCA_900634775.1_fGouWil2.1 fish GCA_901343595.1_MONAX5 mammals GCA_901699155.1_bStrTur1.1 birds GCA_901699165.1_bStrTur1.1_alternate_haplotype birds GCA_901709675.1_fSynAcu1.1 fish GCA_902153765.1_bAquChr1.2_alternate_haplotype birds GCA_902459505.1_aGeoSer1.1 vertebrate GCA_902500255.1_fThaAma1.1 fish GCA_904849725.1_MorexV3_pseudomolecules_assembly plants GCA_905147045.1_ilAglIoxx1.1 invertebrate @@ -205,30 +214,31 @@ GCF_000442215.1_Lipotes_vexillifer_v1 mammals GCF_000471905.2_AMTR1.0 plants GCF_000495115.1_PopEup_1.0 plants GCF_000503995.1_CerSol_1.0 invertebrate GCF_000511025.2_RefBeet-1.2.2 plants GCF_000687205.1_ASM68720v1 birds GCF_000690535.1_ASM69053v1 birds GCF_000691845.1_ASM69184v1 birds GCF_000695815.1_ASM69581v1 birds GCF_000699005.1_ASM69900v1 birds GCF_000699245.1_ASM69924v1 birds GCF_000700745.1_ASM70074v1 birds GCF_000709325.1_ASM70932v1 birds GCF_000709365.1_ASM70936v1 birds GCF_000738735.2_ASM73873v2 birds +GCF_000738735.5_ASM73873v5 birds GCF_000747805.1_ChaPel_1.0 birds GCF_000764305.1_Hazt_2.0 invertebrate GCF_000806345.1_ASM80634v1 invertebrate GCF_000817695.2_Aradu1.1 plants GCF_000951615.1_common_carp_genome fish GCF_001458135.1_marMar2.1 mammals GCF_001483705.1_ASM148370v1 invertebrate GCF_001531365.1_CcrdV1 plants GCF_001577835.1_Coturnix_japonica_2.0 birds GCF_001594065.1_Ccosl1.0 invertebrate GCF_001594075.1_Tcor1.0 invertebrate GCF_001633185.1_ValleyOak3.0 plants GCF_001640805.1_ASM164080v1 fish GCF_001649575.1_ASM164957v1 fish GCF_001652005.1_ASM165200v1 invertebrate @@ -278,58 +288,62 @@ GCF_004118075.1_ASM411807v1 plants GCF_004126475.1_mPhyDis1_v1.p mammals GCF_004153925.1_Obicornis_v3 invertebrate GCF_004382195.1_ASM438219v1 invertebrate GCF_004664715.1_Pero_0.1 mammals GCF_005281655.1_TAMU_Nfulva_1.0 invertebrate GCF_005508785.1_pea_aphid_22Mar2018_4r6ur invertebrate GCF_006149115.1_Oner_1.0 fish GCF_007474595.1_mLynCan4_v1.p mammals GCF_008315115.1_SLUC_FBN_1 fish GCF_008831285.1_ASM883128v1 plants GCF_009650485.1_drosAlbom15112-1751.03v1 invertebrate GCF_009764565.2_rDerCor1.pri.v3 vertebrate GCF_009819885.1_bCatUst1.pri birds GCF_009828535.1_HMol primates +GCF_009828535.2_HMol_V2 primates GCF_009829125.1_fPerMag1.pri fish GCF_009858895.2_ASM985889v3 viral GCF_010645085.1_ASM1064508v1 vertebrate GCF_010909765.1_sAmbRad1.pri vertebrate GCF_011064685.1_ZJU_Sfru_1.0 invertebrate GCF_012460135.1_BPBGC_Mater_1.0 birds GCF_013339695.1_ASM1333969v1 invertebrate GCF_013377495.1_Cygnus_atratus_primary_v1.0 birds GCF_014805625.1_Yale_Gfus_2 invertebrate GCF_014824575.1_WHU_Shon_v2 mammals GCF_014898055.1_MPIMG_talOcc4 mammals GCF_014898055.2_MPIMG_talOcc4v2 mammals GCF_014905685.1_NemWhi1 fish GCF_015227805.1_bHirRus1.pri.v2 birds GCF_015228065.1_NSTDA_Pmon_1 invertebrate GCF_015237465.1_rCheMyd1.pri vertebrate GCF_016086655.2_UVic_Lsal_1.1 invertebrate GCF_016699345.1_BCM_Sbol_2.0 primates GCF_016700215.1_bGalGal1.pat.whiteleghornlayer.GRCg7w birds GCF_016746245.1_Prin_Dsan_1.0 invertebrate GCF_016746365.1_Prin_Dyak_Tai18E2_2.0 invertebrate GCF_016746395.1_Prin_Dsim_3.0 invertebrate GCF_016801865.1_TS_Cpip_V1 invertebrate GCF_016920785.1_Ixodes_scapularus_ComboLowHiFi invertebrate GCF_017639655.1_bFalNau1.pat birds +GCF_021218885.1_Marmota_monax_Labrador192_V1.0 mammals GCF_021288785.1_ASM2128878v2 mammals +GCF_023065955.1_UrsArc1.0 mammals GCF_900094665.1_CAROLI_EIJ_v1.1 mammals GCF_900246225.1_fAstCal1.2 fish GCF_900324465.1_fAnaTes1.1 fish GCF_900324465.2_fAnaTes1.2 fish GCF_900324485.1_fMasArm1.1 fish GCF_900496995.1_bAquChr1.2 birds GCF_900634625.1_fParRan2.1 fish GCF_900634775.1_fGouWil2.1 fish GCF_900634795.2_fBetSpl5.2 fish +GCF_900634795.3_fBetSpl5.3 fish GCF_900700375.1_fDenClu1.1 fish GCF_900700415.1_Ch_v2.0.2 fish GCF_900747795.1_fErpCal1.1 vertebrate GCF_900880675.1_fSpaAur1.1 fish GCF_900963305.1_fEcheNa1.1 fish GCF_901001165.1_fSalTru1.1 fish GCF_902150015.1_genome_assembly_l500 birds GCF_903992535.1_mArvAmp1.1 mammals