ba37a4e86e631db3df00bf18b8eaf4d8d296387f hiram Tue Oct 3 09:18:54 2023 -0700 an update to the primary listing refs #29545 diff --git src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt index efe9bcf..d849ea4 100644 --- src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt +++ src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt @@ -346,101 +346,127 @@ 13146 GCF_012275295.1_bMelUnd1.mat.Z birds 7936 GCF_013347855.1_fAngAng1.pri fish 8005 GCF_013358815.1_fEleEle1.pri fish 118141 GCF_013368585.1_fMegCyp1.pri fish 51298 GCF_014108235.1_mMyoMyo1.p mammals 59472 GCF_014108245.1_mPipKuh1.p mammals 27622 GCF_014108415.1_mMolMol1.p mammals 9407 GCF_014176215.1_mRouAeg1.p mammals 118200 GCF_014839835.1_bDryPub1.pri birds 120794 GCF_015220075.1_bFalRus1.pri birds 27675 GCF_015220235.1_mChoDid1.pri mammals 42514 GCF_015220715.1_fPygNat1.pri fish 72105 GCF_015220745.1_fSebUmb1.pri fish 10116 GCF_015227675.2_mRatBN7.2 mammals 43150 GCF_015227805.1_bHirRus1.pri.v2 birds +43150 GCF_015227805.2_bHirRus1.pri.v3 birds 8469 GCF_015237465.1_rCheMyd1.pri reptiles 8469 GCF_015237465.2_rCheMyd1.pri.v2 reptiles 8839 GCF_015476345.1_ZJU1.0 birds 9261 GCF_015852505.1_mTacAcu1.pri mammals 9031 GCF_016699485.2_bGalGal1.mat.broiler.GRCg7b birds 9031 GCF_016700215.1_bGalGal1.pat.whiteleghornlayer.GRCg7w birds 9031 GCF_016700215.2_bGalGal1.pat.whiteleghornlayer.GRCg7w birds 13397 GCF_017639515.1_sCarCar2.pri sharks 148594 GCF_017639655.1_bFalNau1.pat birds 148594 GCF_017639655.2_bFalNau1.pat birds 1250792 GCF_017639745.1_fMelBoe1.pri fish 109905 GCF_017976325.1_fCheRos1.pri fish 55661 GCF_017976375.1_bCucCan1.pri birds 941984 GCF_017976425.1_fToxJac2.pri fish 34773 GCF_018492685.1_fAloSap1.pri fish 33562 GCF_019393635.1_mDroGli1.pri mammals 75038 GCF_020382885.2_fScaArg1.pri fish 9447 GCF_020740605.2_mLemCat1.pri mammals 51337 GCF_020740685.1_mJacJac1.mat.Y.cur mammals 134902 GCF_020740725.1_bCorHaw1.pri.cur birds 8895 GCF_020740795.1_bApuApu2.pri.cur birds +77932 GCF_020826845.1_mDicBic1.mat.cur mammals 208333 GCF_021462225.1_DD_fGirMul_XY1 fish 64668 GCF_023343835.1_bLagMut1_primary birds +345164 GCF_023634085.1_bFalChe1.pri birds +8954 GCF_023634155.1_bFalPer1.pri birds +345155 GCF_023638135.1_bFalBia1.pri birds 109475 GCF_024139225.1_mSunEtr1.pri.cur mammals 99487 GCF_024166365.1_mEleMax1_primary_haplotype mammals 286002 GCF_025201925.1_rGopFla2.mat.asm reptiles 202280 GCF_026419915.1_bHarHar1_primary_haplotype birds +27615 GCF_026419965.1_mKogBre1_haplotype_1 mammals 81927 GCF_026979565.1_bVidCha1_merged_haplotype birds 65483 GCF_027172205.1_rPodRaf1.pri reptiles 310915 GCF_027358585.1_fPanHyp1.pri fish 233779 GCF_027358695.1_aSpeBom1.2.pri amphibians 9470 GCF_027406575.1_mNycCou1.pri mammals 13676 GCF_027409825.1_fScoJap1.pri fish +2857394 GCF_027579445.1_bAmmNel1.pri birds 8345 GCF_027579735.1_aBomBom1.pri amphibians 42254 GCF_027595985.1_mSorAra2.pri mammals +2857398 GCF_027887145.1_bAmmCau1.pri birds 2991368 GCF_027887155.1_rMalTer1.hap1 reptiles +13616 GCF_027887165.1_mMonDom1.pri mammals +44398 GCF_028018845.1_bMelGeo1.pri birds 75485 GCF_028500815.1_bRisTri1.patW.cur.20221130 birds 9117 GCF_028858705.1_bGruAme1.mat birds +327740 GCF_029499605.1_aHylSar1.hap1 amphibians +2546036 GCF_029633865.1_fLamInc1.hap2 fish +460621 GCF_029931775.1_rEulEur1.hap1 reptiles +143292 GCF_030020395.1_mManPen7.hap1 mammals +575201 GCF_030028045.1_mHipAmp2.hap2 mammals +9666 GCF_030435805.1_mMusLut2.pri mammals +9361 GCF_030445035.1_mDasNov1.hap2 mammals +48891 GCF_030490865.1_bPoeAtr1.hap1 birds +3053191 GCF_030684315.1_sSteTig4.hap1 sharks 8154 GCF_900246225.1_fAstCal1.2 fish 64144 GCF_900324465.2_fAnaTes1.2 fish 205130 GCF_900324485.2_fMasArm1.2 fish 223781 GCF_900496995.1_bAquChr1.2 birds 223781 GCF_900496995.4_bAquChr1.4 birds 56716 GCF_900634415.1_fCotGob3.1 fish 210632 GCF_900634625.1_fParRan2.1 fish 441366 GCF_900634775.1_fGouWil2.1 fish 158456 GCF_900634795.2_fBetSpl5.2 fish 158456 GCF_900634795.3_fBetSpl5.3 fish +158456 GCF_900634795.4_fBetSpl5.4 fish 299321 GCF_900700375.1_fDenClu1.1 fish 27687 GCF_900747795.1_fErpCal1.1 fish 27687 GCF_900747795.2_fErpCal1.3 fish 8175 GCF_900880675.1_fSpaAur1.1 fish 173247 GCF_900963305.1_fEcheNa1.1 fish 113540 GCF_900964775.1_fSclFor1.1 fish 31033 GCF_901000725.2_fTakRub1.2 fish 194408 GCF_901001135.1_aRhiBiv1.1 amphibians 8032 GCF_901001165.1_fSalTru1.1 fish 161584 GCF_901709675.1_fSynAcu1.2 fish 1415580 GCF_901765095.1_aMicUni1.1 amphibians 181472 GCF_902148845.1_fSalaFa1.1 fish 375764 GCF_902148855.1_fSphaOr1.1 fish 586833 GCF_902150065.1_fMyrMur1.1 fish 8049 GCF_902167405.1_gadMor3.0 fish 29144 GCF_902362185.1_fChaCha1.1 fish 7604 GCF_902459465.1_eAstRub1.3 echinoderm 260995 GCF_902459505.1_aGeoSer1.1 amphibians 390379 GCF_902500255.1_fThaAma1.1 fish 6579 GCF_902652985.1_xPecMax1.1 molluscs 9657 GCF_902655055.1_mLutLut1.2 mammals 30640 GCF_902686445.1_mSciCar1.2 mammals +7906 GCF_902713425.1_fAciRut3.2_maternal_haplotype fish 7906 GCF_902713435.1_fAciRut3.1_paternal_haplotype fish 1047088 GCF_903992535.1_mArvAmp1.1 mammals 1047088 GCF_903992535.2_mArvAmp1.2 mammals 38674 GCF_903995425.1_mOncTor1.1 mammals 60746 GCF_903995435.1_mAcoRus1.1 mammals 8177 GCF_904848185.1_fAcaLat1.1 fish 91739 GCF_905147365.1_ilAriAges1.1 insects 116150 GCF_905163445.1_ilParAegt1.1 insects 8384 GCF_905171765.1_aBufBuf1.1 amphibians 8407 GCF_905171775.1_aRanTem1.1 amphibians 9860 GCF_910594005.1_mCerEla1.1 mammals 8240 GCF_910596095.1_fThuMac1.1 fish 8236 GCF_914725855.1_fThuAlb1.1 fish 9733 GCF_937001465.1_mOrcOrc1.1 mammals 10129 GCF_947179515.1_mApoSyl1.1 mammals 8262 GCF_947347685.1_fPlePla1.1 fish +9767 GCF_949987535.1_mBalAcu1.1 mammals +269649 GCF_950005125.1_mChiNiv1.1 mammals +90069 GCF_958295425.1_fSolSol10.1 fish +217509 GCF_963082965.1_fCarCar2.1 fish +98922 GCF_963259705.1_mMyoDau2.1 mammals