69674723e539da023afcf3612d50bcc89be5f29f
hiram
  Wed Oct 4 14:58:09 2023 -0700
adding cite reference stanza refs #29545

diff --git src/hg/utils/automation/asmHubGatewayPage.pl src/hg/utils/automation/asmHubGatewayPage.pl
index 15b7a7c..b03ba25 100755
--- src/hg/utils/automation/asmHubGatewayPage.pl
+++ src/hg/utils/automation/asmHubGatewayPage.pl
@@ -348,31 +348,44 @@
     if ($gtf =~ m/gff3.gz/) {
       printf "<li><a href='https://$sourceServer/hubs/$localDataUrl/genes/$gtf' target=_blank>$gtf</a> gene GFF3 file</li>\n";
     } else {
       printf "<li><a href='https://$sourceServer/hubs/$localDataUrl/genes/$gtf' target=_blank>$gtf</a> gene GTF file</li>\n";
     }
  }
  close (GD);
 }
 
 if ( -d "${buildDir}/otherAligners" ) {
   printf "<li><a href='https://$sourceServer/hubs/$localDataUrl/otherAligners/' target=_blank>pre-computed indices</a> for alignment programs: bowtie2, bwa-mem2, hisat2, minimap2</li>\n";
 }
 
 printf "<li>explore the hub directory at: <a href='https://$sourceServer/hubs/$localDataUrl/' target=_blank>$sourceServer/hubs/$localDataUrl/</a></li>
 </ul>
+</p>
 ";
+
+print <<"END";
+<hr>
+<h4>Cite reference: To reference these resources in publications, please credit:</h4>
+<p>
+Clawson, H., Lee, B.T., Raney, B.J. et al.
+"<b>GenArk: towards a million UCSC genome browsers</b>.<br><em>Genome Biol</em> 24, 217 (2023).
+<a href='https://doi.org/10.1186/s13059-023-03057-x' target=_blank>
+https://doi.org/10.1186/s13059-023-03057-x</a>
+</p>
+END
+
 printf "</p>\n<hr>
 <h4>Copy this entire assembly hub for local use</h4>
 <p>
 This download is only for the purpose of using this assembly hub in
 your institution which may have firewall access restrictions to this
 data.<br>
 
 To download this assembly data, use this <b>rsync</b> command:
 <pre>
   rsync -a -P \\
     rsync://$sourceServer/hubs/$localDataUrl/ \\
       ./$accessionId/
 </pre>
 
   which creates the local directory: <b>./$accessionId/</b><br>