c0c874f6d123d68c0a58d59d89cd1f378fe2b18b lrnassar Fri Oct 6 12:37:17 2023 -0700 Removing confusing language about SNVs being simple nucleotide variants vs single nucroltide variants, refs email from Braney. diff --git src/hg/makeDb/trackDb/evaSnp.html src/hg/makeDb/trackDb/evaSnp.html index 82444f7..2c3cb58 100644 --- src/hg/makeDb/trackDb/evaSnp.html +++ src/hg/makeDb/trackDb/evaSnp.html @@ -1,20 +1,20 @@ <h2>Description</h2> <p> This track contains mappings of single nucleotide variants -and small insertions and deletions (indels) — collectively Simple -Nucleotide Variants (SNVs) — from the European Variation Archive +and small insertions and deletions (indels) +from the European Variation Archive (<a href="https://www.ebi.ac.uk/eva/" target="_blank">EVA</A>) Release 3 for the $organism $db genome. The dbSNP database at NCBI no longer hosts non-human variants. </p> <h2>Interpreting and Configuring the Graphical Display</h2> <p> Variants are shown as single tick marks at most zoom levels. When viewing the track at or near base-level resolution, the displayed width of the SNP variant corresponds to the width of the variant in the reference sequence. Insertions are indicated by a single tick mark displayed between two nucleotides, single nucleotide polymorphisms are displayed as the width of a single base, and multiple nucleotide variants are represented by a block that spans two or more bases. The display is set to automatically collapse to dense visibility when there are more than 100k variants in the window.