db4660fe604ccb1b21aa3b5dfe3421cf8ac662eb
chmalee
  Fri Sep 22 07:40:45 2023 -0700
Move refSeqHistorical into hg38 trackDb instead of just the top level refSeqComposite, refs build email

diff --git src/hg/makeDb/trackDb/refSeqComposite.ra src/hg/makeDb/trackDb/refSeqComposite.ra
index 75d3aa1..17fce5a 100644
--- src/hg/makeDb/trackDb/refSeqComposite.ra
+++ src/hg/makeDb/trackDb/refSeqComposite.ra
@@ -100,41 +100,30 @@
         baseColorUseCds given
         baseColorDefault genomicCodons
 
         track ncbiRefSeqHgmd
         parent refSeqComposite off
         priority 9
         type genePred
         shortLabel RefSeq HGMD
         longLabel NCBI RefSeq HGMD subset: transcripts with clinical variants in HGMD
         trackHandler ncbiRefSeq
         idXref ncbiRefSeqLink mrnaAcc name
         color 20,20,160
         baseColorUseCds given
         baseColorDefault genomicCodons
 
-        track ncbiRefSeqHistorical
-        parent refSeqComposite off
-        priority 10000
-        type bigBed 12 .
-        skipEmptyFields on
-        shortLabel RefSeq Historical
-        longLabel NCBI RefSeq Historical Transcript Versions
-        bigDataUrl /gbdb/$D/ncbiRefSeq/refSeqHistorical.bb
-        searchIndex name
-        release alpha
-
 searchName ncbiRefSeqCuratedName2
 searchTable ncbiRefSeqCurated
 searchMethod prefix
 query select chrom, txStart,txEnd, name from %s where name2 like '%s%%'
 searchPriority 1.07200
 
 searchName ncbiRefSeqPredictedName2
 searchTable ncbiRefSeqPredicted
 searchMethod prefix
 query select chrom, txStart,txEnd, name from %s where name2 like '%s%%'
 searchPriority 1.07201
 
 searchName ncbiRefSeqCuratedProtAcc
 searchTable ncbiRefSeqCurated
 searchType genePred
@@ -192,19 +181,15 @@
 semiShortCircuit 1
 termRegex X[MR]_[0-9]{6}[0-9]*\.[0-9]+
 searchPriority 2.07204
 
 searchName ncbiRefSeqPredictedNoVersion
 searchTable ncbiRefSeqPredicted
 query select chrom,txStart,txEnd,name from %s where name like '%s.%%'
 semiShortCircuit 1
 termRegex X[MR]_[0-9]{6}[0-9]*
 dontCheck X[MR]_[0-9]{6}[0-9]*\.[0-9]+
 searchPriority 2.07204
 
 searchTable ncbiRefSeqOther
 searchPriority 2.07207
 searchType bigBed
-
-searchTable ncbiRefSeqHistorical
-searchPriority 20
-searchType bigBed