8bf17b1c0edbe0abc9bf503871b442566fc22831
max
  Thu Sep 21 01:11:28 2023 -0700
removing sdsc download option from gbic, refs #32241

diff --git src/product/installer/browserSetup.sh src/product/installer/browserSetup.sh
index 601a6b6..356b746 100644
--- src/product/installer/browserSetup.sh
+++ src/product/installer/browserSetup.sh
@@ -392,31 +392,32 @@
                         assembly, switch to on-the-fly mode (see the -f option)
   bash $0 minimal hg19 - download only the minimal tables for the hg19 assembly
   bash $0 mirror hg19 mm9 - download hg19 and mm9, switch
                         to offline mode (see the -o option)
   bash $0 -t noEncode mirror hg19  - install Genome Browser, download hg19 
                         but no ENCODE tables and switch to offline mode 
                         (see the -o option)
   bash $0 update hg19 -  update all data and all tables of the hg19 assembly
                          (in total 7TB). Specifying no assemblies will update all assemblies.
   bash $0 cgiUpdate   -  update the Genome Browser CGI programs
   bash $0 clean       -  remove temporary files older than one day
 
 All options have to precede the command.
 
 options:
-  -a   - use alternative download server at SDSC
+  -a   - use alternative download server at Univ Bielefeld, Germany
+         (used by default if faster ping time than to UCSC)
   -b   - batch mode, do not prompt for key presses
   -t   - For the "mirror" command: Track selection, requires a value.
          This option is only useful for Human/Mouse assemblies.
          Download only certain tracks, possible values:
          noEncode = do not download any tables with the wgEncode prefix, 
                     except Gencode genes, saves 4TB/6TB for hg19
          bestEncode = our ENCODE recommendation, all summary tracks, saves
                     2TB/6TB for hg19
          main = only Gencode genes and common SNPs, 5GB for hg19
   -u   - use UDR (fast UDP) file transfers for the download.
          Requires at least one open UDP incoming port 9000-9100.
          (UDR is not available for Mac OSX)
          This option will download a udr binary to /usr/local/bin
   -o   - switch to offline-mode. Remove all statements from hg.conf that allow
          loading data on-the-fly from the UCSC download server. Requires that
@@ -1873,33 +1874,30 @@
    exit 0
 fi
 
 while getopts ":baeut:hof" opt; do
   case $opt in
     h)
       echo "$HELP_STR"
       exit 0
       ;;
     b)
       function waitKey {
           echo
       }
       ;;
     a)
-      HGDOWNLOAD=hgdownload-sd.sdsc.edu
-      ;;
-    e)
       HGDOWNLOAD=hgdownload-euro.soe.ucsc.edu
       ;;
     t)
       val=${OPTARG}
       # need to include all subdirectories for include to work
       # need to exclude everything else for exclude to work
       if [[ "$val" == "bestEncode" ]]; then
           RSYNCOPTS="-m --include=wgEncodeGencode* --include=wgEncodeBroadHistone* --include=wgEncodeReg* --include=wgEncodeAwg* --include=wgEncode*Mapability* --include=*/ --exclude=wgEncode*"
           ONLYGENOMES=0
       elif [[ "$val" == "noEncode" ]]; then
           RSYNCOPTS="-m --include=wgEncodeGencode* --include=*/ --exclude=wgEncode*"
           ONLYGENOMES=0
       elif [[ "$val" == "main" ]]; then
           # gbCdnaInfo
           # SNP table selection explained in #17335