dd6685988d7600e805dcf71b943d806dd10289cf braney Sat Sep 30 17:05:23 2023 -0700 relax the constraint on sorting for bedToBigBed and bedGraphToBigWig. diff --git src/utils/bedToBigBed/tests/makefile src/utils/bedToBigBed/tests/makefile index e561f36..b033fea 100644 --- src/utils/bedToBigBed/tests/makefile +++ src/utils/bedToBigBed/tests/makefile @@ -1,20 +1,20 @@ kentSrc = ../../.. A = bedToBigBed include ../../../inc/common.mk -test: testRgb testNotSorted testMultiInsAtEnd itemsRgb tabSep testBadChrom1 testBbSize1 testBbSize2 testDevStdin testStdin testCompress +test: testRgb testMultiInsAtEnd itemsRgb tabSep testBadChrom1 testBbSize1 testBbSize2 testDevStdin testStdin testCompress testBadChrom1: outputDir -${BINDIR}/${A} input/colored.genbank.bed input/human.chrom.sizes.txt output/noFile.chromAlias.bb -tab -type=bed12+13 -as=input/bigGenePred.as 2> output/testBadChrom1.err diff expected/testBadChrom1.err output/testBadChrom1.err output/human.chromAlias.bb: outputDir ${BINDIR}/${A} input/human.chromAlias.bed input/human.chrom.sizes.txt output/human.chromAlias.bb -tab -type=bed3+4 -as=input/chromAliasIndex.as -extraIndex=genbank,ensembl,ncbi,ucsc testBbSize1: outputDir output/human.chromAlias.bb ${BINDIR}/${A} input/colored.genbank.bed output/human.chromAlias.bb output/colored.genbank.bb -sizesIsChromAliasBb -tab -type=bed12+13 -as=input/bigGenePred.as bigBedToBed output/colored.genbank.bb output/colored.genbank.bed diff input/colored.genbank.bed output/colored.genbank.bed testBbSize2: outputDir output/human.chromAlias.bb -${BINDIR}/${A} input/mixed.bed output/human.chromAlias.bb output/noFile.chromAlias.bb -sizesIsChromAliasBb -tab -type=bed12+13 -as=input/bigGenePred.as 2> output/mixed.err