2f68ddece42ca7ef91bcaa53dfc9b6940b0ef1e3
gperez2
  Wed Sep 27 13:56:11 2023 -0700
Making VISTA Enhancers into native track, refs #16044

diff --git src/hg/makeDb/doc/mm10.txt src/hg/makeDb/doc/mm10.txt
index fe73e9f..315bc9e 100644
--- src/hg/makeDb/doc/mm10.txt
+++ src/hg/makeDb/doc/mm10.txt
@@ -19208,15 +19208,28 @@
     ln -s `pwd`/mm10.p6.allGaps.bed /gbdb/mm10/bbi/allGaps.bb
 
     #  all these gaps:
     featureBits -countGaps mm10 mm10.p6.allGaps.bed > fb.allGaps.txt 2>&1
     #	79435853 bases of 2818974548 (2.818%) in intersection
 
     # standard AGP defined gap track:
     featureBits -countGaps mm10 mm10.gap.bed > fb.gap.txt 2>&1
     #	79370942 bases of 2818974548 (2.816%) in intersection
 
     # with both, should be identical to the standard gap track:
     featureBits -countGaps mm10 mm10.gap.bed mm10.p6.allGaps.bed
     #	79370942 bases of 2818974548 (2.816%) in intersection
 
 ##############################################################################
+# VISTA Enhancers track refs #16044  (2023-09-20 Gerardo)
+cd /hive/data/outside/
+mkdir vistaEnhancers; cd vistaEnhancers
+mkdir mm10; cd mm10
+liftOver -bedPlus=9 /hive/data/outside/vistaEnhancers/mm9/sortedVistaEnhancers.bed /hive/data/gbdb/mm9/liftOver/mm9ToMm10.over.chain.gz vistaEnhancers.bed unMapped
+bedToBigBed -tab -type=bed9+ -as=/hive/data/outside/vistaEnhancers/mm9/vistaEnhancers.as vistaEnhancers.bed https://hgdownload.soe.ucsc.edu/goldenPath/mm10/bigZips/mm10.chrom.sizes vistaEnhancers.bb
+cd /gbdb/mm10
+mkdir vistaEnhancers; cd vistaEnhancers
+# Making symlink for big files
+ln -s /hive/data/outside/vistaEnhancers/mm10/vistaEnhancers.bb
+cd ~/kent/src/hg/makeDb/trackDb/mouse/mm10
+vi trackDb.ra
+#############################################################################