2f68ddece42ca7ef91bcaa53dfc9b6940b0ef1e3 gperez2 Wed Sep 27 13:56:11 2023 -0700 Making VISTA Enhancers into native track, refs #16044 diff --git src/hg/makeDb/doc/mm39/vistaEnhancers.txt src/hg/makeDb/doc/mm39/vistaEnhancers.txt new file mode 100644 index 0000000..6ac79fd --- /dev/null +++ src/hg/makeDb/doc/mm39/vistaEnhancers.txt @@ -0,0 +1,13 @@ +# VISTA Enhancers track refs #16044 (2023-09-20 Gerardo) +cd /hive/data/outside/ +mkdir vistaEnhancers; cd vistaEnhancers +mkdir mm39; cd mm39 +liftOver -bedPlus=9 /hive/data/outside/vistaEnhancers/mm9/sortedVistaEnhancers.bed /hive/data/gbdb/mm9/liftOver/mm9ToMm39.over.chain.gz vistaEnhancers.bed unMapped +bedToBigBed -tab -type=bed9+ -as=/hive/data/outside/vistaEnhancers/mm9/vistaEnhancers.as vistaEnhancers.bed https://hgdownload.soe.ucsc.edu/goldenPath/mm39/bigZips/mm39.chrom.sizes vistaEnhancers.bb +cd /gbdb/mm39 +mkdir vistaEnhancers; cd vistaEnhancers +# Making symlink for big files +ln -s /hive/data/outside/vistaEnhancers/mm39/vistaEnhancers.bb +cd ~/kent/src/hg/makeDb/trackDb/mouse/mm39 +vi trackDb.ra +#############################################################################