6b286d22a77aecb95c842c8b9416153b4007d64d gperez2 Fri Sep 29 13:47:16 2023 -0700 Suppressing https timeout expired output from the cron, refs #29319 diff --git src/utils/qa/hubCheckPublicHubs.sh src/utils/qa/hubCheckPublicHubs.sh index acea844..983eba9 100755 --- src/utils/qa/hubCheckPublicHubs.sh +++ src/utils/qa/hubCheckPublicHubs.sh @@ -1,18 +1,18 @@ #!/usr/bin/env bash # Program Header # Name: Gerardo Perez # Description: A program that runs hubCheck for all the public hubs on the RR and outputs it into a file # # hubCheckPublicHubs.sh # mkdir -p /hive/users/qateam/hubCheckCronArchive/`date +'%Y-%m'`/ echo '#############################################' >> /hive/users/qateam/hubCheckCronArchive/`date +'%Y-%m'`/hubCheck_output for output in $(/cluster/bin/x86_64/hgsql -h genome-centdb -Ne "select hubUrl from hubPublic" hgcentral | tail -n +2) do echo $output >> /hive/users/qateam/hubCheckCronArchive/`date +'%Y-%m'`/hubCheck_output - /cluster/bin/x86_64/hubCheck $output >> /hive/users/qateam/hubCheckCronArchive/`date +'%Y-%m'`/hubCheck_output + /cluster/bin/x86_64/hubCheck $output 2> /dev/null >> /hive/users/qateam/hubCheckCronArchive/`date +'%Y-%m'`/hubCheck_output echo '#############################################' >> /hive/users/qateam/hubCheckCronArchive/`date +'%Y-%m'`/hubCheck_output done