2f68ddece42ca7ef91bcaa53dfc9b6940b0ef1e3 gperez2 Wed Sep 27 13:56:11 2023 -0700 Making VISTA Enhancers into native track, refs #16044 diff --git src/hg/makeDb/doc/hg38/vistaEnhancers.txt src/hg/makeDb/doc/hg38/vistaEnhancers.txt new file mode 100644 index 0000000..86d213c --- /dev/null +++ src/hg/makeDb/doc/hg38/vistaEnhancers.txt @@ -0,0 +1,14 @@ +# VISTA Enhancers track refs #16044 (2023-09-20 Gerardo) +cd /hive/data/outside/ +mkdir vistaEnhancers; cd vistaEnhancers +mkdir hg38; cd hg38 +liftOver -bedPlus=9 /hive/data/outside/vistaEnhancers/hg19/sortedVistaEnhancers.bed /hive/data/gbdb/hg19/liftOver/hg19ToHg38.over.chain.gz vistaEnhancers.bed unMapped +bedToBigBed -tab -type=bed9+ -as=/hive/data/outside/vistaEnhancers/hg19/vistaEnhancers.as vistaEnhancers.bed https://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/hg38.chrom.sizes vistaEnhancers.bb +cd /gbdb/hg38 +mkdir vistaEnhancers; cd vistaEnhancers +# Making symlink for big files +ln -s /hive/data/outside/vistaEnhancers/hg38/vistaEnhancers.bb +cd ~/kent/src/hg/makeDb/trackDb/human/hg38 +vi trackDb.ra +############################################################################# +