dc8a08fcc82b341a89fc2fdc58754f7c0a29ea31 hiram Thu Sep 28 12:09:36 2023 -0700 update five assemblies refs #29545 diff --git src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt index cac7d90..d07af0b 100644 --- src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt +++ src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt @@ -90,30 +90,31 @@ GCA_004026725.1_OnyTor_v1_BIUU mammals GCA_004026785.1_MerUng_v1_BIUU mammals GCA_004026985.1_MyoMyo_v1_BIUU mammals GCA_004027225.2_bStrHab1.2.pri birds GCA_004027395.1_CanFam_VD_v1_BIUU mammals GCA_004027435.1_ArtJam_v1_BIUU mammals GCA_004027515.1_AntAmePen_v1_BIUU mammals GCA_004027675.1_CasCan_v1_BIUU mammals GCA_004027815.1_NycCou_v1_BIUU primates GCA_004027855.1_ChoDid_v1_BIUU mammals GCA_004027935.1_ChrAsi_v1_BIUU mammals GCA_004115215.3_mOrnAna1.pri.v3 mammals GCA_004115265.2_mRhiFer1_v1.p mammals GCA_004365145.1_OryAfe_v1_BIUU mammals GCA_006229205.1_meerkat_22Aug2017_6uvM2_HiC mammals +GCA_007210705.1_Tcal_SD_v2.1 invertebrate GCA_007364275.2_fArcCen1 fish GCA_009663435.1_Callithrix_jacchus_cj1700_1.0 primates GCA_009762305.1_mZalCal1.pri mammals GCA_009764475.1_sPriPec2.pri vertebrate GCA_009764565.1_rDerCor1.pri vertebrate GCA_009769485.1_bCygOlo1.alt birds GCA_009769545.1_fCycLum1.pri fish GCA_009769625.1_bCygOlo1.pri birds GCA_009806435.2_UM_NZW_1.0 mammals GCA_009819505.1_bCatUst1.alt birds GCA_009819705.1_fHipHip1.pri fish GCA_009829125.1_fPerMag1.pri fish GCA_009873245.2_mBalMus1.v2 mammals GCA_009914755.4_T2T-CHM13v2.0 primates GCA_010909765.1_sAmbRad1.pri vertebrate @@ -130,30 +131,31 @@ GCA_015227675.2_mRatBN7.2 mammals GCA_015227805.2_bHirRus1.pri.v2 birds GCA_015227805.3_bHirRus1.pri.v3 birds GCA_016128335.1_ZJU1.0 birds GCA_016432865.1_AdamAnt mammals GCA_017976375.1_bCucCan1.pri birds GCA_018139145.1_ASM1813914v1 birds GCA_018296145.1_Otsh_v2.0 fish GCA_020740725.1_bCorHaw1.pri.cur birds GCA_020740795.1_bApuApu2.pri.cur birds GCA_020826845.1_mDicBic1.mat.cur mammals GCA_023634155.1_bFalPer1.pri birds GCA_023634085.1_bFalChe1.pri birds GCA_023638135.1_bFalBia1.pri birds GCA_026419965.1_mKogBre1_haplotype_1 mammals +GCA_027579445.1_bAmmNel1.pri birds GCA_027887145.1_bAmmCau1.pri birds GCA_027887165.1_mMonDom1.pri mammals GCA_028018845.1_bMelGeo1.pri birds GCA_028500815.1_bRisTri1.patW.cur.20221130 birds GCA_900006655.3_Susie3 primates GCA_900094665.2_CAROLI_EIJ_v1.1 mammals GCA_900324465.2_fAnaTes1.2 fish GCA_900634415.1_fCotGob3.1 fish GCA_900634775.1_fGouWil2.1 fish GCA_901343595.1_MONAX5 mammals GCA_901699155.1_bStrTur1.1 birds GCA_901699165.1_bStrTur1.1_alternate_haplotype birds GCA_901709675.1_fSynAcu1.1 fish GCA_902153765.1_bAquChr1.2_alternate_haplotype birds GCA_902459505.1_aGeoSer1.1 vertebrate @@ -217,30 +219,31 @@ GCF_000503995.1_CerSol_1.0 invertebrate GCF_000511025.2_RefBeet-1.2.2 plants GCF_000687205.1_ASM68720v1 birds GCF_000690535.1_ASM69053v1 birds GCF_000691845.1_ASM69184v1 birds GCF_000695815.1_ASM69581v1 birds GCF_000699005.1_ASM69900v1 birds GCF_000699245.1_ASM69924v1 birds GCF_000700745.1_ASM70074v1 birds GCF_000709325.1_ASM70932v1 birds GCF_000709365.1_ASM70936v1 birds GCF_000738735.2_ASM73873v2 birds GCF_000738735.5_ASM73873v5 birds GCF_000747805.1_ChaPel_1.0 birds GCF_000764305.1_Hazt_2.0 invertebrate +GCF_000801105.1_Rs1.0 plants GCF_000806345.1_ASM80634v1 invertebrate GCF_000817695.2_Aradu1.1 plants GCF_000951615.1_common_carp_genome fish GCF_001458135.1_marMar2.1 mammals GCF_001483705.1_ASM148370v1 invertebrate GCF_001531365.1_CcrdV1 plants GCF_001577835.1_Coturnix_japonica_2.0 birds GCF_001594065.1_Ccosl1.0 invertebrate GCF_001594075.1_Tcor1.0 invertebrate GCF_001633185.1_ValleyOak3.0 plants GCF_001640805.1_ASM164080v1 fish GCF_001649575.1_ASM164957v1 fish GCF_001652005.1_ASM165200v1 invertebrate GCF_001659605.1_Manihot_esculenta_v6 plants GCF_001660625.1_IpCoco_1.2 fish @@ -276,30 +279,32 @@ GCF_003031525.1_Neophocaena_asiaeorientalis_V1 mammals GCF_003227715.1_Hsal_v8.5 invertebrate GCF_003584765.1_ASM358476v1 mammals GCF_003668045.1_CriGri-PICR mammals GCF_003676075.1_ASM367607v1 mammals GCF_003676075.2_GSC_YBM_2.0 mammals GCF_003710045.1_USU_Nmel_1.2 invertebrate GCF_003945595.1_ASM394559v1 birds GCF_003957565.1_bTaeGut1_v1.p birds GCF_004027225.1_bStrHab1_v1.p birds GCF_004115215.1_mOrnAna1.p.v1 mammals GCF_004115265.1_mRhiFer1_v1.p mammals GCF_004118075.1_ASM411807v1 plants GCF_004126475.1_mPhyDis1_v1.p mammals GCF_004153925.1_Obicornis_v3 invertebrate +GCF_004193835.1_ASM419383v1 invertebrate +GCF_004193835.2_ASM419383v2 invertebrate GCF_004382195.1_ASM438219v1 invertebrate GCF_004664715.1_Pero_0.1 mammals GCF_005281655.1_TAMU_Nfulva_1.0 invertebrate GCF_005508785.1_pea_aphid_22Mar2018_4r6ur invertebrate GCF_006149115.1_Oner_1.0 fish GCF_007474595.1_mLynCan4_v1.p mammals GCF_008315115.1_SLUC_FBN_1 fish GCF_008831285.1_ASM883128v1 plants GCF_009650485.1_drosAlbom15112-1751.03v1 invertebrate GCF_009764565.2_rDerCor1.pri.v3 vertebrate GCF_009819885.1_bCatUst1.pri birds GCF_009828535.1_HMol primates GCF_009828535.2_HMol_V2 primates GCF_009829125.1_fPerMag1.pri fish GCF_009858895.2_ASM985889v3 viral @@ -335,15 +340,16 @@ GCF_900324465.2_fAnaTes1.2 fish GCF_900324485.1_fMasArm1.1 fish GCF_900496995.1_bAquChr1.2 birds GCF_900634625.1_fParRan2.1 fish GCF_900634775.1_fGouWil2.1 fish GCF_900634795.2_fBetSpl5.2 fish GCF_900634795.3_fBetSpl5.3 fish GCF_900700375.1_fDenClu1.1 fish GCF_900700415.1_Ch_v2.0.2 fish GCF_900747795.1_fErpCal1.1 vertebrate GCF_900880675.1_fSpaAur1.1 fish GCF_900963305.1_fEcheNa1.1 fish GCF_901001165.1_fSalTru1.1 fish GCF_902150015.1_genome_assembly_l500 birds GCF_903992535.1_mArvAmp1.1 mammals +GCF_932274485.1_xgPatVulg1.1 invertebrate